Special

RnoINT0114534 @ rn6

Intron Retention

Gene
Description
patatin-like phospholipase domain containing 7 [Source:RGD Symbol;Acc:708466]
Coordinates
chr3:2250555-2255828:+
Coord C1 exon
chr3:2250555-2250673
Coord A exon
chr3:2250674-2255671
Coord C2 exon
chr3:2255672-2255828
Length
4998 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCTGTTCTTATTGGTGAAGAGG
3' ss Score
1.37
Exon sequences
Seq C1 exon
GTTGAGATGTACACACGCATTTTCCAACGACCACCAGACCGTCATTCCGACTTTTCCCGCCTGGCCCGGATCCTGACAGGCAATGCCATTGCCTTGGTGCTTGGAGGGGGTGGAGCCAG
Seq A exon
GTGAGTCCCCGTCCGACTGTGTGCTGTGTGTGTGTGTGTGGGGGGGTGACAGTTATTCCCACCGGCTTTACCCTGAGCATGAGGAATATGGTAGTGTGGTGCCATAGATGGAGACCCTTGGACCACTCTAGTATCCTCAGGAAGGAGTCCACATGGATGGCGAGGGTGTGGTCTGTATCTGGGTACATGAATGTTTATAGCCCAGATGTTCTGGATTTCACGATGCCAGTTAGGCAGAAGAAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGGTTCTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACTGAACCCAGGGCCTTGCACTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAGAAAATGTGTGTATTATCCGAGTGTCTGTGCTTAGCAGCATTTGTTTGGTTAGCCATGTGTTTCCTCTTTGAACATTGCCTGTCATTTGCTGGCTCCCCATTGGGCTCCCATGAAGTTCTTCCCACTTTAATACACTCTCAGTGGAAGAATGACCTGATGTGCTCATGAACTAGAGAAATAGCCTTTAGTTCGTTGGTCTCTGCATTCTTTAAAGGACTTTTAGCCCATGTAATTCCTACCCTGAGTTGTCTTCTGATCCTTCTGAGCTGAAAGAAGTGGGGGCCCAGGGCATCATAGGGAAGATGAAGTGGTGATCCAGACGTGAGCGAAGGGCAGCATCAGACCACACATCTCCCAGGAAGAGGGTGCTCTGGAGCTGGCCTCTGTGAGCCGAATCCTGGCTCTGCTCAGTCTGGTAGTGAAGTGACACCACTGTATCTTGAGATCCTGGGGGAAGCCGACCCAGTGGAGTGTTGTGACGGCTTCCATCGCCAGGTAGCGAGAGGCTCTGGTCCCTCCTGTGGCTCTGGATAGTAGAAGCTTAGAAGAACAGTTGGGTCTAGACCTGGTCCTGGTTTGCAGTTGAATTCTTCACTTTGCTCAAGGTGTACTTAACAGCGATGTGGTTCTATACGGTACAAGAAGCAGTCCCCTGCCTGCCCCTCCCAGAGCCAAATCTACAGACTCCCCAGAAGTAACTCTGTTCAACCTTCCAACAATGTACACGTGGGGCTCTTCGTGCACGCTCCTAGTCTGTGGCTCTGCTTCTGTCTCTTGTCCTCATCACCCTCATGAGGAACCAGCACTGGGACAGCCAGCACTGGGACAGCCAGCACTGGGACAGCCAGCACTGGGACGGCCAGCACTGGGACAGCCAGCACTGGGACAGCCAACACTGAGATGGCCAGCACTGGGACAGCCAGCACTGGGACGGCCAGCACTGGGACAGCCAGCACTGAGATGGCCAGCACTGAGACAGCCAACACTGAGATGGCCAGCACTGGGACGGCCAGCACTGGGACAGCCAGCACTGGGATAGCTCCTTCAGAGATAAATCTTATCCATGGGGCTCTGACACTATTTCCTTCTTAGGAATTTCTGACTGCCGTGTTTGCTTGAGCCCCATTTCCAGCGTTTTCGGTATACTGGCAAAGACTGTCAGAGCAGTCACAGCTTCTTTGTCCAGAACGTCTCCATTTGAGTTTTCTAGGGTTGCACACCCGCTAGCATAAAGTCCCTCATCGTCACTGATCTTCTTCCAGCTGACTGTTGGACCTGAGATTTTTCTTTGCCACCATCCTAACAAATGCCTTTGTTTTATTCCCTTGTTTAGCTCCACTTTCTCTTTGTTGAAATCTCCTGGAGAGGCTGTGTGGGAGGTGACAGTGTTAGCACTGGGCCTGTCCACAGACCTTCCGTCTGCTCTCTCAGACTTGAGCGAGGGTTTGGCTAGGCCTAGAATTCAAGATGAAGATAATCTCTGAGAAGTTCTGTCACAGCTGTACTGCGTGTGTAGCTTGGGTACTGTGGAGATGACTGATAACTGGTTCTACTCACCGCCCTTACTCTCCGCTTATGGAGACTCGGGGTTCCCTTAATCTTGTTCTGAAAGGATGTGGTGGTGTCTCAGTGCTGCTGCTGGTCTCCATAGGACTGGAGTCCCCCAAGGCCCTTCCACATTTGGAAATGCGTGAGATTGAAACTCTGGGAAATGTTTCAGCTTTACTTATTTTATTTTATGTATGTATTTTATCTGCATGTGCAGTTTATTGTCTGCAGAGGCCAGAGAGGGTGTCGGATCCCCTAGACCTGTAGTCTCGGACGGTTGTTAGCTGACGTGTAGGTGCTGGGAGATAAACCCGGACGCTCTGGAGGACCAGTCAGTCAGCTCTTAGCCCCTGAGCCCTCTCTCCTCAATTGTATCTTTCAACTTAATTTTCTACTAAAATCTTTTAATACTTTGAATTTTATTTTTGTTTATTTTGTTTTCTTTGAGACAAGTTCTCTTTACCTGACCCAAGCTGGCCTGGGGCTTGAGATTGTCCTGCTCCTCACCAGTGCTGGTGACACCAGCTGGTTTGTTCCGTGTGCCACGTGGGGACGGCCCTTCCTCCCACAGTGTTCTCTCTCACTAACGTGCTATGCTTGGAGGCGCCAGAAGCACATCTTTCGTTTATTGCTCTGTTTGCTTGCTTGGAATTTCCTGTGTGTGTAGGTTTGTCCACTCGGAGTGATGCCTGACGAGTGGTGTCACTCAGAGTGACGTTCCAGGTGGGGCACAAGATGCTCTCTCATCGCTGGATTTTGGCAGCCTTCTTTCTGTTTAGATGTTCCAGTTTTTTGGTTCCAGTTATAAGGAGCAAAACTACAATATCTTTTTTTAGTGGATGTATGTTTTCCTTTCCTCTTGGACAAATATAGGAGTGGGGTAGTGATACCGTTTACACCCCACCAGCCATGTGTGAGAGCTCCGTTTCCTTTTCTAGTTTACCCTGGATGTTGTTGGAGCCACTCTGGTGGGTGTGCAGCGCTGGTCTGCAGGCTGTTCTACCAGACACTGCACTCACAGGCTGTCCCGCCTTTTTCATTGTCCTTGCTGCCTTTGTTGAGAAGGAGCCATTTGAAGTCTTCTCAGTAGATTGTCTCTTATTCTTGAGTTGGGAAAAGTCTTTATTTATTCTTCCTGAGAGTCTTTCCAGGTGCATTTATGCCAGCGTTTCCCCTCGGTCTCTGGTTCTCTCTCAGTGTCAGCTTTGAATGAAGGCACTAAGCCTCACATCATTCTCTCTGTCTCTATCTCTGCATCTCTGTGTCTCTGTCCCTGTCTCTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTGTGTGTGAGTGTATGTGTGCGTGTGTGTGTACGTGTTCGTGTCATGGCAGTGGTTCCAGAGACAACCTCGGGTGTCATTCCTCAGGTACCTGTACCATCTACGTTGCTTTTTGAGACAGGGTCTTTTACCTCGGAGTTTGCCAAGCAGGCTAAGCACTGCTCCCCTCAGTGCTGCTACTCTCCAGGCCCCAAGCAGCTCAGTAACTATGTAGCTAATACCTTACTTCTAGCCATCTGCAGTGATCTTTTGAATCTATATTGACTCTACTTCCAGTAAAGTCTTTTAAATCCTTTTGTAGCTATTCTGTAATGCAGGCAGGCACACACACACACACACACACACACACACACACACACGCACACGCACACGCACACGCACATACACAGACACACAGACAGACACACAGGCACACACACTGGTATGAGAGCATGGGACAACCAGCTATCCTGGGAAATTAGGACTACTTGATAAATTGCTGCCAATGAACCAGCTTGTGAGTTTATTGTTTACTGAGTAAATTCTCGACATTGAGGAGAAGGAGGATGGTGAATTTGAGGCCAGCACAAGCTATGGTGTCTCAGAAAAATAGACAAGAGCAGACATAAAAGACCTGAAATCTAAGCAGACATCAGAAAGTGTCAACAAAGCAAAAATGTGGGCTTTGAAAGGACAGTTGAGGAAAAGAGCAAGATGCAGGAAGTCCCCGCTGTGAGACATGTGTCAGGGAGGCTGGCACAGCCGCTCTGATTTCAGGACAGTGGATCCGTGCTGTACATCGACTGCGTCTGCCCTGCTGTTAACTCACTTGTCAGTGTCTGCATTGCAGTTACGCATTTCATGTCTGTAATCCCGGGAGGCTTGATCCTGATGTCTTTTCTGTAATCCCGGCTTGATCCTGTGTATAGTTCCCATTCTATGTCAGTCACAAGTTGCCTTAATTTCTTCAGCTCTTGTTTTTTGTTATTTGCTTGTTTGCAGTTTGGGTTGTTGTTGTTGTTTCTTTCTTTTGAGAAAGGGTCTCAGTATTTAACTCTGACCGGCCTGGAGCTCTCTATGTAGACCAGGCTGGCTTTCAGCTCACACAGATAGATCCACCTGCTTCTGCCTCCCAAGTAGTAGAATTAAAGGCGTGTGCCACCATGGCCTCTCTCAGCAGGAGGTAGGTTTGGTTTGGTTTGGTTTGGTCTGATTTTTTGTTTTTTAAGGAAACTGGTCTCTCTGTTCCTGGAACTTACTATGTAAACAAGGCTCCAGGGGTTACAGAGAAGGCTCAGTGGTCAAAAGCTACTGGCTGTTCTTCCAGAGGACCCTGTTCAATTCCCAGCAACCACATGGACTAATTTTTTTCTAGGTTTTCTCATTCCCACTTTTCCTAACCACAGTAAGCTAAAAAAAAAGCCTGCTCATTTTCCCAGACTCTGGTGCTCTGGTGGACTCAGCAGTGCATAGACAAGGCCACCCTGGCTCTCCTTGTAAAGCCTGCCTTCCCATTTCGACCCTATAGTCACCTGGGCACCTCCAGAGAGAGAGATTCTAAGTCATATACAGACTTCTCTCTCAGCCTTTCGTCTCTTTGCCCCATTGTCTGTGGTCATGCAAACTCCGGGTTCTGAGGAGGGAGAGTGGTCAGATAATCTGGGCAGCTGCCTCTCAGGCCTTATAGGGCATAGAGCTCAAGGGCTGGCCTGGCTGCGGTCTTATGTTCTTTCTCTGTTCTTATTGGTGAAG
Seq C2 exon
AGGGTGTGCCCAGGTAGGTATCCTCAGGGCACTAGCAGAATGTGGCATCCCCGTGGACATAATCGGAGGGACATCCATTGGGGCTTTCATGGGCGCTCTGTTTGCTGAGGAGCGAAGCTACAGCCAGATACGGATCCGGGCCAAGCAGTGGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008190:ENSRNOT00000011633:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0173417=Patatin=PU(4.8=20.0)
A:
NA
C2:
PF0173417=Patatin=FE(31.1=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]