RnoINT0118687 @ rn6
Intron Retention
Gene
ENSRNOG00000047969 | Prss21
Description
serine protease 21 [Source:RGD Symbol;Acc:727870]
Coordinates
chr10:13219125-13219894:+
Coord C1 exon
chr10:13219125-13219279
Coord A exon
chr10:13219280-13219561
Coord C2 exon
chr10:13219562-13219894
Length
282 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TTACCTATGCTGCTCCTCAGGGT
3' ss Score
7.85
Exon sequences
Seq C1 exon
GTCTGCCACTTCCCAACAACCTCCAGGAAGTGCAGGTAGCTATCATCAACAACACCATGTGTAACCATTTGTTCAAAAAGCCAGACTTCCGAATAAACATCTGGGGAGACATGGTTTGCGCTGGCAGTCCTGAAGGCGGCAAGGATGCCTGCTTT
Seq A exon
GTAAGTGTCACCTTGCATTACCATGCTCTTCTGGGCCCAGTACCTTACCATCCCTGGCTCCAACTTCCTCCCAGTGGAGGTTTCATAGAAGACCTCATTTCATCTCAGGATTTAGACCATGGCCCCACTTTGCAGATGAGGAAACTGAGGGCCCACTGCTGTCAGGGCAAGGAGTAGGATACTCACCCAGTCTGCCAGCCCCACAGCAACCCCTGTGCCCTAGCGCCTCTCCTGGTCCCACTTGTCACCCTCCAGGCCAAGCTTACCTATGCTGCTCCTCAG
Seq C2 exon
GGTGACTCAGGAGGACCCTTGGTCTGCAACCAGGATACAGTGTGGTATCAGGTCGGAGTTGTGAGCTGGGGAATAGGCTGTGGTCGGCCCAATCGCCCTGGAGTCTATACCAACATCAGTCATCACTACAACTGGATCCGGTTGACTATGATCCGAAACGGGATGCTCAGGCCTGACCCAGCCCCCCTACTGCTGTTTCTTACTCTGGCCTGGGCTTCTTCCTCTCTGCTGAGGCCTGCCTGAGCCTTCGTGTGTAAAGCAGGGCACCTGTGGGGTCAGGCTGTTTCTTTTGTATCTCGTTTGCTAATAAACACATTGATAGTTTCCTATCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047969:ENSRNOT00000073065:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.0=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAACAACCTCCAGGAAGT
R:
CGGATCATAGTCAACCGGATCC
Band lengths:
300-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]