RnoINT0118777 @ rn6
Intron Retention
Gene
ENSRNOG00000029649 | Prss45
Description
serine protease 45 [Source:RGD Symbol;Acc:1303021]
Coordinates
chr8:119116322-119117733:+
Coord C1 exon
chr8:119116322-119116596
Coord A exon
chr8:119116597-119117569
Coord C2 exon
chr8:119117570-119117733
Length
973 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATCCCTTATGTTCCCTACAGCCA
3' ss Score
8.98
Exon sequences
Seq C1 exon
CAACAAAGAATACTTAGTGATGTTGGGTAGCAGCACACTCCAGCCCAGCGGCTCCCCCTGGGCCCTGAAGATTCCCGTGGGTGACATCATCATGCATCCCAAGTACTGGGGCCAGAACTTCATCAGAAGCGATATTGCCCTTCTCTGTCTTGAAACCCCTGTCACTTTCAACAAGTACATACAGCCCATCTGTCTCCCAGAGCACAACTTCAACTTGAAGGTCGGTATGAAGTGCTGGGTGACTGGCTGGGGCCAGGCTAAGCAACACCCCTCAG
Seq A exon
GTGAGTTGGATGGGGTTGGGGACGCCCCTTTGGGTCTTTATCGTCCTCTCCCTTATGGTGCCTTTGAGGAGGCTATGACTGTGGTCTTTCCTCATATGGTGCCCATTGTCATGGTTCACACAGCCCTGCAGTAAGGCTAATACTGCTTGGGCTGGTAGGCGTGTTCGTCTACCTTATAGAAAAATGCAAGATTTAGGGAGCCACCAAGTCCCCTTCCCTACCTACCTCCCTACCTCCCTCCTTTCCTCCCTTCTCTGTCCCTCCCTCCCTCCTTCCCTGGCCACAACTGAAACAGCTGCAGTACTCTGAGCCCTGAGCATCGGAATACATGAAAGGAAGTCACAGAGTAGGCCATTGGGGTGAGCAGCCAGAGGCTGACAGAGCAAGTGTGGAGGAAGCCAGGTATACGGATGAATGCCACCTGTGATCCAGCATTAGGGAAGTGGATCCAGGGAGTGATGGGTTCAGAGTCAACCCCAAGTACATACGTTTGCTACCAACCAGGGCCACGTGAGACTGTTTTAAAAACAAAAACACACACACACACACACACACACACACACACACACACACACACACAAGCAAGGCAAAGATCAGGGGACCTGAGCTGAACTCTGAGTAGATAGATGACCTGACGCCTAGACGCAGCTGTCAGCAGCTTCGAAGTCAACAAACACATGGAAAGAGAAATCACAGGGGCCTGGCCCTGTGTACGTGGCTGTACTGTGACTCAGTAGCCTTCTGGGTTCAGCAGCAAAACCTTCCTAGAGAAGAGGCTGCTGAACCAAGGCCTTGCCTGCAGAGGGGCTCTCCCTGTCCGGCCCGCACTGCAGAGAAAGACCGCTGGAAGGGATGCTGCACAGATGTGGTAGAGTCATCAGCTGATCTGCAGGCTAGGAAGGACCATGACACTGGGCAGAGCAGGGGCTGACGGGAGTGAGGGGTCACAGCTTATCCCTTATGTTCCCTACAG
Seq C2 exon
CCAAGTTGACACGGAGTCTAGAGCTTTGGGAGGCTGAGGTATCCATTGTTGACAACAAGAACTGTGACAGAGTCTTCCACAAGAAGACCTTCTATCCCCAAGTTATCCCCCTTATCCGGAAGAACATGATCTGTACCACCAATCATAGGGAGAACCCGTGCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029649:ENSRNOT00000043249:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGGTGACATCATCATGCA
R:
GGTTCTCCCTATGATTGGTGGT
Band lengths:
356-1329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]