RnoINT0118829 @ rn6
Intron Retention
Gene
ENSRNOG00000025293 | Prss57
Description
serine protease 57 [Source:RGD Symbol;Acc:1303330]
Coordinates
chr7:12801993-12803534:+
Coord C1 exon
chr7:12801993-12802137
Coord A exon
chr7:12802138-12803270
Coord C2 exon
chr7:12803271-12803534
Length
1133 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
ATCTAGCACTCTTCCTGCAGCTG
3' ss Score
6.75
Exon sequences
Seq C1 exon
GGACCCCTCCACTGGCCTGGTGGTGCTTGGGGCCCATGCCCTGCTCACCCCGGAGCCCACACAACAGGTATTTGGCATTGCGGCTGTTGTCAGCCATCCTGATTTTGAGCCGACCACACAGGCCAATGACATCTGCCTGCTAAGG
Seq A exon
GTGAGCTGAGCTGCAGGAGGGCGACTGGCAGACCAGGACCCATCTGATCTCTGAGGTCTTCATTTAATTTATGGGTGGGGTTGAGGACGAACTCTTTCTTTTCTTTTTCCTTTCCTTTCTTTTCAAGAAGGATCTCACTATGGAGCTTTGGCTGTCCTGAAATACTCTGTAGACCAGTCTGGACTCAAACTCACTGAGATCTGCCTGCCTCTCCCTTTCGAGTGCTACCTCAACCAGCCTGGACATTTTTGCATGCTAAGGAGCCCATGCCTAGGGTCCCCGAACTCTATTTGAAAATGGCTGGTAGAACCTGGAACCCCTGAATCCTGTTACACAGCTATCTCTACTGCCCCAAACTCTCCATGACTTCCACCTGTCAGAACAAAAACCAAAGCCAAGAACCCCTGGGTTCTGTTTCTCAAGGGTGTGTCCTAGAGCTGGCCTACAGGTACCTTCCCAAGCCCTCCTTGGACTGTGAGCTTCAGGGTGTGGTAGTTTTTGTAGGACAAAAAGGGAGGGAATGAGGGTTTCCACAACCAGAGGCTGGGGGGCTGGGACCCCTTAGAATCATCTGACTTCCAGTACAAGTGAAGAAACTGAGGCTGGGAAATGGGGAAACTGAGGTAGAGGTGCATTGAGATGCGCCAGTCCTGAGTCTGGTCACTTTTTCCACATCCGCCAGCTGAGTGGCAGGAGACTGGGCTGAGGCCCCAGGTAGTCACCCAATCAAAGCTGCACAGCTAACTGGGTGCACAGGGGCCCCGAGGTGCTTGTTTGCACTTCGGAGCTTGGGAGGCCCCCTGAAGGAAGTGATGTCTAAACTGAGGCTGAATGGGAAGGTACACGAGCTGGGAAACTCTAAAGGGAGGTGGACTCACCAGTGGGCCAGGAGCCTTCACCCCAAGGACAATGGGAGTTATGGAGGGCTCAGAAGCGAGGAGGATGCTGAGAGATGGGTGGAAGGTCATATCCCTGGTTCGTGATGGAGTTGTCTGGTGTGGTAGGAGGCAGTCTGATGGCGGGTGGACCACAGCTGTTACTGGTTCTTGACACCACAGGGACACTAAGGTGGGAGAAGGGTGACGAGTTGGGTACGAGGGTGGGTGACACTGAATCTAGCACTCTTCCTGCAG
Seq C2 exon
CTGAATGGCTCTGCTGTGCTGGGCCCCGCTGTGAGGCTATTGCGACTGCCTCGGAGAGGAGCTAAGCCTCCCGTGGCGGGCACCCGGTGCCGCGTATCTGGCTGGGGCTCCGTGTCTGACTTTGAGGAGCCTCCACCTGGGCTGATGGAAGTCGAGGTGCGCATACTAGACCTGAGCGTCTGCAACAGCTCCTGGCAGGGCCAGCTGAGTCCTGCCATGCTCTGTACCCACAGTGGGGACCGCCGGCGGCGTGGTTTCTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025293:ENSRNOT00000038553:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.3=100)
A:
NA
C2:
PF0008921=Trypsin=FE(38.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTTGGCATTGCGGCTGTT
R:
CGAGCAGAAACCACGCCG
Band lengths:
342-1475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]