MmuINT0127569 @ mm9
Intron Retention
Gene
ENSMUSG00000020323 | Prssl1
Description
protease, serine 57 [Source:MGI Symbol;Acc:MGI:1920356]
Coordinates
chr10:79247091-79248644:-
Coord C1 exon
chr10:79248500-79248644
Coord A exon
chr10:79247355-79248499
Coord C2 exon
chr10:79247091-79247354
Length
1145 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
ATCTAGCATTCTTCCTGCAGTTG
3' ss Score
6.03
Exon sequences
Seq C1 exon
GGACCCCTCCATGGGGCTGGTGGTGCTGGGGGCCCACGCACTGCTCGCCCCAGAGCCCACACAGCAGACATTTAGCATTGCAGCTGCTGTCAGCCATCCTGATTTCCAGCCTGCCACACAGGCCAACGATATCTGCCTGCTAAGG
Seq A exon
GTGAGCTGGGCTGCAGCAGGGTGATTGGCAGGTCAGGGCTCATCTGATTTCTGAGTTTATTCATTTAATTTACTTGTGGGGCTGGGGATGAACTCTTTCTTTTCTTCCCTTTCCTTTCCTTTTTTTTTTTTTTTTTTTTTTCTTTTCTTTTTGAGACAGGGTCTTGCTATACAGCTCTGGCTATCCTGAAGCACTATATAGACCAGGTTGGACTCAAACTCACAGAGATCTGCCTGCCTTTGCCTCCCCAGTACCACCACAACCAGCCTGGACCCTTTTCTTTCACGCTAGGAAAAGGCTCTGCTATGAGCTCAGGCCTGGGTCTCTGAATCCTGTCATCCATCTGAACTGCCTTAAGCCCTCCATGCTTCCATCTGTCAGAACAAAAGAACCAAAGCCAAGAACCCCTTGGGTTCTGTTTCTCGAGGGTGTGTCTGTCTCAGAGCTGGCCTACAGGAGGTACCTTTGCAAGCCCTCCATGGACTGTGGGCTTCAGGGTGTGGTGGTGAGGTTTTTTTGGTTTTGTTTTTGTATTTTAGGACAAAACAGGAGTGAATGAGGGTTTCCACAGCCAGAGGCTGGGGTTAGGACCCCTTAGAGTCACCTGACCCCCAGTACAAGTGAAGAAACTGAGGCTGGAAAATGGGGAAACTTAGGTAGAAGTGTATCGAGATGTGCCTGGGTCTGGTCATTTTTTCCACACCCTTCAGCTGTGTGGCAGGAGACCCGGCCGAGGCCCCAGGCAGCCACCTGGCAAAGCTACACAGCTAACTGGGTGCACAGGGGTCCCGAGGTGCCTGTTTGCACTGCAGAGTTTCAGAGGCCTCCTGAAGGAAGTGATGTCTAAACTGAGGCTCAATGGGAAGGTACTCCAGCTGGGAAACTCGCAAGGGGGTTGGAATCACCGGTGGGGCCAGGAGCCTTCACCCCAAGGACAAGGGGAGTTATGGAGGGCTGAGAAGCGAGGAGGACTCTGCGAGATGAGGTGGAAGGTAATATCCTTGGTCCATGATGGAGCTGCCTGGTATAGTTGGAGGCAGTGTCTGATGGAGGGTGGACCACATCTGTTACTGATTCTAGACACCATAGGGACACTGAGTCGGGTGTGAGAGTGGGTGGCACTGAATCTAGCATTCTTCCTGCAG
Seq C2 exon
TTGAACGGCTCTGCTGTCCTGGGCCCCGCTGTGAGGCTATTACGATTGCCTCGGAGAAATGCTAAGCCACCTGCTGCGGGCACGCGTTGCCATGTATCCGGCTGGGGCTTCGTGTCTGACTTTGAGGAGCCTCCGCCTGGACTGATGGAAGTCGAGGTGCGCATACTGGATCTGAGTGTCTGCAACAGCTCCTGGCAGGGCCAGCTGAATCCTGCCATGCTCTGCACTCACAGTGGGGACCGCCGGCGGCGTGGTTTCTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020323-Prssl1:NM_001042710:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.3=100)
A:
NA
C2:
PF0008921=Trypsin=PU(97.3=98.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCACACAGCAGACATTT
R:
CGAGCAGAAACCACGCCG
Band lengths:
357-1502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: