MmuINT0127569 @ mm10
Intron Retention
Gene
ENSMUSG00000020323 | Prss57
Description
protease, serine 57 [Source:MGI Symbol;Acc:MGI:1920356]
Coordinates
chr10:79784346-79785899:-
Coord C1 exon
chr10:79785755-79785899
Coord A exon
chr10:79784610-79785754
Coord C2 exon
chr10:79784346-79784609
Length
1145 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
ATCTAGCATTCTTCCTGCAGTTG
3' ss Score
6.03
Exon sequences
Seq C1 exon
GGACCCCTCCATGGGGCTGGTGGTGCTGGGGGCCCACGCACTGCTCGCCCCAGAGCCCACACAGCAGACATTTAGCATTGCAGCTGCTGTCAGCCATCCTGATTTCCAGCCTGCCACACAGGCCAACGATATCTGCCTGCTAAGG
Seq A exon
GTGAGCTGGGCTGCAGCAGGGTGATTGGCAGGTCAGGGCTCATCTGATTTCTGAGTTTATTCATTTAATTTACTTGTGGGGCTGGGGATGAACTCTTTCTTTTCTTCCCTTTCCTTTCCTTTTTTTTTTTTTTTTTTTTTTCTTTTCTTTTTGAGACAGGGTCTTGCTATACAGCTCTGGCTATCCTGAAGCACTATATAGACCAGGTTGGACTCAAACTCACAGAGATCTGCCTGCCTTTGCCTCCCCAGTACCACCACAACCAGCCTGGACCCTTTTCTTTCACGCTAGGAAAAGGCTCTGCTATGAGCTCAGGCCTGGGTCTCTGAATCCTGTCATCCATCTGAACTGCCTTAAGCCCTCCATGCTTCCATCTGTCAGAACAAAAGAACCAAAGCCAAGAACCCCTTGGGTTCTGTTTCTCGAGGGTGTGTCTGTCTCAGAGCTGGCCTACAGGAGGTACCTTTGCAAGCCCTCCATGGACTGTGGGCTTCAGGGTGTGGTGGTGAGGTTTTTTTGGTTTTGTTTTTGTATTTTAGGACAAAACAGGAGTGAATGAGGGTTTCCACAGCCAGAGGCTGGGGTTAGGACCCCTTAGAGTCACCTGACCCCCAGTACAAGTGAAGAAACTGAGGCTGGAAAATGGGGAAACTTAGGTAGAAGTGTATCGAGATGTGCCTGGGTCTGGTCATTTTTTCCACACCCTTCAGCTGTGTGGCAGGAGACCCGGCCGAGGCCCCAGGCAGCCACCTGGCAAAGCTACACAGCTAACTGGGTGCACAGGGGTCCCGAGGTGCCTGTTTGCACTGCAGAGTTTCAGAGGCCTCCTGAAGGAAGTGATGTCTAAACTGAGGCTCAATGGGAAGGTACTCCAGCTGGGAAACTCGCAAGGGGGTTGGAATCACCGGTGGGGCCAGGAGCCTTCACCCCAAGGACAAGGGGAGTTATGGAGGGCTGAGAAGCGAGGAGGACTCTGCGAGATGAGGTGGAAGGTAATATCCTTGGTCCATGATGGAGCTGCCTGGTATAGTTGGAGGCAGTGTCTGATGGAGGGTGGACCACATCTGTTACTGATTCTAGACACCATAGGGACACTGAGTCGGGTGTGAGAGTGGGTGGCACTGAATCTAGCATTCTTCCTGCAG
Seq C2 exon
TTGAACGGCTCTGCTGTCCTGGGCCCCGCTGTGAGGCTATTACGATTGCCTCGGAGAAATGCTAAGCCACCTGCTGCGGGCACGCGTTGCCATGTATCCGGCTGGGGCTTCGTGTCTGACTTTGAGGAGCCTCCGCCTGGACTGATGGAAGTCGAGGTGCGCATACTGGATCTGAGTGTCTGCAACAGCTCCTGGCAGGGCCAGCTGAATCCTGCCATGCTCTGCACTCACAGTGGGGACCGCCGGCGGCGTGGTTTCTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020323:ENSMUST00000169684:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.3=100)
A:
NA
C2:
PF0008921=Trypsin=PU(97.3=98.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCACACAGCAGACATTT
R:
CGAGCAGAAACCACGCCG
Band lengths:
357-1502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types