BtaINT0118804 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021616 | PRSS57
Description
protease, serine, 57 [Source:HGNC Symbol;Acc:HGNC:31397]
Coordinates
chr7:44905750-44907790:-
Coord C1 exon
chr7:44907646-44907790
Coord A exon
chr7:44906014-44907645
Coord C2 exon
chr7:44905750-44906013
Length
1632 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
TGCACCTCCCGCCCCTGCAGCTG
3' ss Score
10.24
Exon sequences
Seq C1 exon
AGACCCCGGGACAGGCCTGGTAGTGCTGGGGGCCCATGCCTTGCGCACCAAGGAGGCCACACAGCAGGTGTTCAGCATCTCCGCTGTCATCACACACCCAGACTACCAGCCCACCACGCACACCAGTGACATCTGTCTGCTGCAG
Seq A exon
GTGACCCATTGCGTGGGGATCGGGCCCTCGGTGCAGGTCGGACCTGTCCCTACCCCTCCCCTTACCATGGCCTGACTTGTTTAAAAACAGCTGTTAGGCGCCTGTGAGTCAAGTCACTCCCTCCACTGCCCTCTGGAACACCCACCCAGCCCGCTTGGCCTGCTGCTTGCTGAGCAGTCAGCACCCCAACAGGCTCTGACCCCCGGGCCTTTGCGCTGGCTGTGGCCCTGCCCAGCCCATGTTCCCCAGACTCCATGTGGCTTTCAGGTCTTTGCTCAGTTGTCCCCTTCTCAGGCAGCCTCCCTTAATGACCTCCAGTTCTCGGCTGCCCCTGGCTCCCCCCTTCTCACCCCATCCCCTCTTCTGTGTCCAGCACCACCCACACCTTCTGGAAGCACCTGTACCACTGGTTCCACCTCTGCCCTTGAGGGCGGGGATTTTTATCTCGTCTGTGGTGAGTTGTGGTACACAGCAGATGCTCAACATTCACGTTGAAACAGTGAGACTGTAGGGCCATCAAAGACCCTGATCCCTGCCCCCTCAGGCCCTCCAGGGGGTTTCTTCCCTCCCCGCACATGTGCCTCTATTTGGACCTCACATGGCCCTTCCTGCTTGGGGGACCACCCTTCCCACAGCCCCCACCTGGGGGGCCCCAAATTCAACCCCAGGGACTACGGAGCTGCCATTTAAAGGGAGAATATCCCCAAACTGCCCTTGAAATGGGTGAAAATCAAACAGAGGGGACATTCAACACAACAAAAATGAAACCCTGGGAACAGGAGGGTCTAGGGTGTGGGGTTTTCTTGGCAAAATATAATGTAGGCAGCCAGTGTTGGCAGCCAAAGCTGGCATATGAATTCTGCTCCTCTGTGAAACCCCGTAGCCTGGAACCCCTGCTCTAATTCACCTAGCCCAGTGTGCAGACGGGGAAACTGAGGCCAGGGGTGATCAGGGATGCACCCAAGATCAGGGAGTGAACACCCAAACCAGGGGTCCCAGTTGTTCATTCCATAACTGCTGATTGAGTGCCATCTGTGTGCCAGGAAACCATGAATACACAGCCATGAACATACAGCCCTGGCCTGGCTCCCTCTGAACTCCCAGTCTAACTAGGTGGCAGCTGAGTAAATCAGCCTTGACAGGAGCACATGGGAGCCCAGAGGAGGCACCTGTCCTAGACTGGCAGTCTGGGAGGACTTCCTGAAAGTGGTGTCTAAGCTGAGTCCTAAAAGCTGGATAGGAAAGGTGCCCCCAGCAGGGGGTACAGTGTTACAGTGTGAGCAAGTGTGCAGGTGGGAGGAGGGGAGGGCCAAACTAATGGGCCAAGAGGTTTTTTATCCCCGTGTCCTAAGGGCAATGGGCATGGAGGAGAGCTCAGAGCAGGGAAAAAGATGCTGGTTAGCAGGACCCCTGGGCAGCTGCGGGGGCGAGACTGGAAGCATGGAGGCTGGTGAGGTCTGATGAGCAGGGGCCCAAGGTGACAGAAGCAGCCGGGCCCTCTGACAGCCTAACAACAGCTGCAACTGACTTCTCTCCACAAGGACAGGAAGAGACGAGGAAAGGTAGACAGGAAGGGGTGGCAGGGGGCGGCTGCAGGCAGGCCTAACCTCCCTGCACCTCCCGCCCCTGCAG
Seq C2 exon
CTGAACAGCTCTGCCACCCTGGGTCCTGCAGTGGGACTACTGGGGCTGCCGCGGAGGGGCGCCAGGCCTCCCCGGGCCGGGACACGCTGCAAGGTGGCTGGCTGGGGCTCCGTGTCCGACTTCGAGGAACTGCCGCCTGGGCTGATGGAAGCTGAGGTCCGCGTGCTGGAGCTGGACGCCTGCAACAGCTCCTGGAAGGGGCAGCTGAGCCCTGCCATGCTCTGCACCCACAGTGGGGACCGCCGGCGACGTGGCTTCTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021616:ENSBTAT00000039232:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.3=100)
A:
NA
C2:
PF0008921=Trypsin=FE(38.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCAGGTGTTCAGCATCT
R:
CGAGCAGAAGCCACGTCG
Band lengths:
350-1982
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]