RnoINT0125078 @ rn6
Intron Retention
Gene
ENSRNOG00000014705 | Rbm20
Description
RNA binding motif protein 20 [Source:RGD Symbol;Acc:1307427]
Coordinates
chr1:274580809-274589816:+
Coord C1 exon
chr1:274580809-274580930
Coord A exon
chr1:274580931-274586749
Coord C2 exon
chr1:274586750-274589816
Length
5819 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TAATGTCCCTCTCCGTGCAGAAG
3' ss Score
8.14
Exon sequences
Seq C1 exon
GAGTGGAGTTCGTGGTTCCCAGGACTGGCTTTTACTGCAAGCTGTGTGGCCTGTTCTACACAAGCGAGGAGGCGGCCAAAGTGAGCCACTGCCGCAGCACTGTACACTACAGGAACTTACAG
Seq A exon
GTAACCAGCCGCCATGCTCGCTGCGCCCCTGATGAGATCCCCCAGCCGACTTGTCCCCGCTCCCCCACCCCCCTCCCCACCACCCCTCCACCCCCACCTCCGCACTCTTTCCTGAGGTGCTCCTGTAAATACCAACCTGAGTATGCAGACAACACCCGACTGCCAGGCTTCCTCCTAAGGGCACCCAGAGCATCAACCCCACAACAGTACTCAGACCGGCTGGTGGCTTTTGAGACATCTGCCACGCCCAGTGAGGTAGAGCAGAATCAAGTTCCACGATCTGCTGGTACTCTCCTGACACATTGGTATAGCTCTCAGCCAGGCCCCGGGCCTTCAGCTGCAGGTATTCCCCGGTCTCTTCCTCTGCGCAGATAACTATATATTTACACACTGGAATAAAGATCACAGTTTCACTTCCATTGAAATGTCTAGATAGCATAACAAATGGTTGTCTCAGGCAGTGCACACACTCGGAACTGTTCTAGGCTCTGCGGATACAACAGCAACAGACGTAGACAAATCTCTCGTAGGGCTTCCGGTCCAGTGTAGGATACCTGTGCAAAATGAAACAGCCAACTGATAAGATATCACTTACAAATACACTAAGCCACATGTCATCCAAGCTAAGACGCCTTTACTTACAAATACCATTTGTTCTTCATGTTTACTCTTTGTCACACGGGAGGTTGGACCTTTAAATATACCAGTCACACTCTCTGCCTCTGAGCCACACCCCCAGCCTGATACACTGTTTCAACACCAATTAGGAAAAGTGATACGGCGAGTTAGACAGTGAGACGCTGTCAGTCGAAGGAAGCATTTTTAACTCAGAGATGTTGGTGGGTTTTCATAAGTATCTAAAGTCAGTGAGCAGTGCTGATTGATGTCCGCCGTTCTGTCAAGGCCTCTGACAGAAACCCTATCTGAGATGGCAGAGGCTCCTGGCTCCCTCATGGGTACACCAGGGAAACTCGAACAGAGGTGGGGCAGAGCTAAGGCAACGTCTGCGCCTAATGTTTTCAGGATTAAGTTCTGGTACAGGCTGGGCTTTGCATGTATTTCATTTATGGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGTGGGTAGTGGGGAGTGGGTGCTTCAAGGCAACTGCTTTTTTACTGTCAGAACCAGAGTTGAGAGGTGGGGAGCTGGGTCAGGCAGTAAAGTGCTTGCCATGTAAGAATGAGGACCTGCATTTGGATCTTTGACACTCACACAGAAGCTGGCTGTGATGTGGCACGCGCTGATAGTCCCAGCCCTGGGGAGGCTGGGGAGGCAGAGACAGGAGAATCTCTGGAGCTCACTGCAGGCAGTCTTGGTGAGTTCCAGGTTCAGTGAGAGACCCTGTCTTAAAATGTAAGGCAGAGTGAAAGAAGCAGACACCTAATATCAGTCACACACACACACACACACAGAGTCACACACTCACACACTCACTCACATACTCACACTCACTCACACAGACACACACGTTCACACATGGACACACTCTTTCTCACACACATACACACACATACACATACTCTCACAGTTACACACACTTACACACTCAGTCTCACATACATACACACGGACACACACTCTCATACATATTCTCACACTCACACAAACTCTCTCACACACACTGTCACACACACAATCCCACACACACATTCACACATGGACACACTCTTTCTCACACACACACACACATACTCACACATACTCTCACAGTTACACACACTTACACACTCAGTCTCACATACATACACATGGACACACACTCTCATACATATTCTCACACTCACACAAACTCTCTCACACACACTGTCACACACACAATCCCACACACTCACTCACACTCACACACACATACTCAGTCTCACACATACACATACACATACACTCACGGACATACTCACACACACATACTCTCATATACACTCACATACTCAGTTACACACTCATACACTCACACTTATACACACTCACACACACTCACATGGAGACACACACACACGGGGACACACACTAAATAAGTAACCAGTGTTTGCCCCACATGGCTCAATCCAAGAAGTGCATGGAGTGTTGCTGCCACTGTTTCGGGGCAGGCATTCCTCTTATAGTTAGTCTTTTAGAGTGACTGCTCTGATCAGGGTTTCTTTTTAAATCGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTTATTTTGTTTTGTATTCAAAGTAGGAACATACATGTGGAGATCGGAGGACAACTTTAAAGAAATCCATTCTCCCTTCTACCATTTGAATTCCCAGGATCAAACCCAGGTCCTCACCCTTCCCCTCGGAGCTGTTTCACTGGACCCAATCTAGAGGGTTCTTAAGCAGGAGTGTGAATCTTAGCATATGTGTAATCAGTCACGCACTGGGGTGGAGTGGTAACATGTCATTTAGGAACATTATTTAAACGGTTACAATGTGAACATCTACACTCACACTTACACACATTGGGAGGTGGGGAGGCACCCTGTTAAGAATCCTGGGTCTGCTTTGTCCTTGAGGAAGCTGAAGCAAGTTCCTAGGCCTTGGGCAGATGCTTTGATCCCTGATCTCTTCCTGTTACTCCAATAGTTAATATTCAGAACCAAGGCCTATGGCCTCTCGGCCTGGCTTTCTCACCGGTAGAGTCTGTCTCTGACTGAACCTGGACAGGATCTCCCTGTAGGGAGCAGCTGTTCTGTGACCACACCGGTCACATGTTCTGGCTCCTTTCAGGGAGGAAAGGGAGTGGAGGCCTGGTTTGTCCAGGGCAGGGACCTCGGGCTGGGCTCTGCAGGGCTGCTTGTGCAGTCAGCCACCCAACCCAAAGAAATCATCCTTTTTAGACCTTTTGCTCACTGGAAGGGTCATGGGGTTCTCTGGTCCTCATTTCCCATCGACTTTGCTGGCATCTTCTAGAAATGCATCTTCTTTGAGCCTCCCCTCCCCTGCTTGCACACTCCTTTTAGTGTAGACCCAGGAATCTTCATTCTTAAAGGTGTATGGCGCTAAAGGCCCAGCCCAGGGCTTTGAACCCAGAGCACATGTTATTCTGTACACCTGAGCCACACACCAAGGCCAAGAATCTTCATGTCTCACAGACTTCCTGGGAATGCCTTAATTCCTCACTCTTTGGTTTCAGAGGAATTGTATAGCCCCCAGGGAGAACCCAGAGTTCAAGTTCACTCCCACTAAGAGCTGTAGGAAGAATTCAGAGACTTCCAGGGCAGTGGCCTGCACTGAGTTCAGGGCCTCTAGGGTCAAACTCCAGGCAGCTTCCCAATCCCACAGCAGACCAGACCGCCATGAGCTCCCTAGATACATTGGGTGTAGACATTGCCTCAGCTCCGGACTCTGTCTGACCTCAGCTCGAGTTTCACTGGTATACCTCATGTCAGGGAGCCAGGAGCCTCGGCCCCAGCGATCTCAGGTAGCGTTTCTCTCAGGGGCCTTGGCTGAATGAACGCTTCTGTCTCTACAGCCTCTCCCACTTCACTCCAAACCACAAGTGTGGAAAGTGATGAAGTCTGGCCCACGGGGCATGTGCTGTCTGACTCAAGACAGGCAACTTCGAAAGTTACCATTCATCAGGAGACCTGACGTGGGGTCTCCCTGGGATGCCTCAGGAGGCAAGAGCCGGTCAAAGCTGTTTCAGTGCAGCTTCTAGAAATCTCACTATGCCGTCGCTGGTCATGGCTCTGTGAGCCCATGGGGAGTGGCACAACAAGTGTAGCTGGGACAAATATGGCTGCAGACCCCAGAGAAGAATGCACACAGACAGGGTGCTCACCCCCTCAGAATTCTCCAGTCAGACACAGGAGAAACTGGGGCTCCCCAGCTGCAGCCTTGCCCACAGGCGTCTGCTAGGGGCCCTTCTCCAAGTCAAACTGCTCCCACTTCCAATGGTGAGGATGACGTTGCTCTCACTCCACAGATCCGTTGTCTGTGGGGGTGGGGAGAGGTGAGGGGCTCCCCAAGTCCTACATCTACTTTAGCCCAGCCTGACATTCCTGAGTATTTACAGTGTGCCAGGCATCATGCCGAATGTTCTGTGAGGCATCCTGTCAGTTCCCCACTCTTAGGAAACACTGCGCCCCCACTCCCTGACTCCTTGCAAGGTTGCCACGGTTACCCTCACTTTACAGACATTAGGGAGATTCAGTCACTTGTCTGCAGAGACAGAAGATTTGAACCCAGGACATCTGTTAGCTGAGACGGCACACTTGACCACCGAACTGGACCTGACCCTTTCTAATTACCAAACGAAGTGCTGGTCGCCTTGTTCTTACCTCTCCAACATGGTCAGGCCTTTCCTCATCTCATTGTCCCATGCATTACAAGCACAGACCAGCCCCAGCTGACTTGTTAGCCAGGGCTGTTCACAGCCCTGAGTGCTCCCAGCACTGTGGAGGTGGTCCTCCATTGGAGAGAGGCCATGCTGTTCTTAGTCTCTAGCTGCCCACCCCCACTCTCCATAGCTTGTCCTACAGGATTGCTGGGCATCTCCGATGTCAACATTTCACAGAGGACCAGTCCTGGGTTTCTGCCGCCCTCCACCTTCCCTCCTTCTGCCGTGACAAACAGGAAGCATTGTCATGAAGAATGCGTTCATGTAGTCAGGCAGCCACTAAGCGCTTGGCAATGAGGAGGGGCCAGAGGGTCGTTTGCTGTGGTTAGTATCTACACTTTCCACTTTCCTCACAGGAGACTCACGTTGTCTGTGAACTAATATAATGTGGTCCCATTGCCCTAAGATAGCTGGAGAGGAGTGACATGGCCCCATTGGCCAAAAGTGACATCAAAGCAGTCCTACACACACACATACACACTCTCACACAGAGGGAGGGGGGAGAGGGAAGGAGGGAGAGGGAGAGACAGACAGATGCATATACACACACACACATACACACACACAGAGGGGGAGGAGGAGAGGGAGAGAGAGAGGGGGAGAGACAGACGAACATGCACACACACATATGCACACCCGCACATACACACATACACACACATACACACACATATGTATACCCACTCATACACACATATACACACAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGACAGAGACAGAGAGGGAGAGGGAGGGAGAGGGAGAGACAGAGGGGGAGGGAGAGAGGGAAGGAGGGAGAGGGAGAGACAGACAGACGCACATGCACACACAATATGCACACCCGCACATACACACATACACACACATACACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACATATGTATACCCACACATACACACACACATACATACAAACACATATACACACACACATACCCACAGAGAAATAAAGAGAGAGAGACAGAGGGGGGGGGAGGGAGAGGGAGAGACAGACAGACACACAGAGTGAGAAAGACACACACATACACACAGAGATAGAGTCAAACAGACACAGAGAGTCAGACAGTCAGACTCACGCACATGTGCACCCATGCACACACAAACACACATACACATCACATCCATTAACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTAATGTCCCTCTCCGTGCAG
Seq C2 exon
AAGTACCTGTCCCAGCTGGCAGAGGAGGGACTGAAGGAGACAGAGGGGGTAGACAGCCCAAGCCCCGAGCGCAGCGGGATTGGTCCACACTTGGAAAGGAAGAAGCTATGATACCGAGGCTGCCACCGTCTCTGGAAGGTGGATGGGAAGCCTGCTGAGCTAAGGCCAGCCTGGTCTCAGGGACAGAACTGAGACCAGAGAAGAAGGAGAGCCAGGCAGGACATGCTGCCGAGATGAGAAAAACACCTTGAAGCCTCTCCAGGAGCTGGCTCACCCTTCCGGGCCCAGCCACCAAGGGTGACCAGCTTCCCATGGCCTCCTGATTCCTTTAGTCTGTTTTCCCTCTCTCCCTCTCACTATCCCTTCTGTGCCAAAGTTTATTTCCTTTTCATAAAACCCAACTTCTCAGGGATTGTCGCTGTGTTTCAAGTTTTGATTGGATGTGGTAGGTCCGTCAAGTGAGGCTGGGTCACACAAGAAAAAAGTTTAATGGAAGGTCTGGGCTTAGAGTTATTTCAGTGAACCTGAGGTGGCCTTGGAACCTGGCTTCTGTGCGTCCCAAGGGTAGGTAAGCTGTCAGGTTCTGCAACCAAGGAATCAGTTGGCAGAGGTGGAAGTGGTTTCACTAAGGTTTCCTCTAGTCGGATCCTCGAAAAGGCTTCTTTTTTCTTTTCAGTTTCTGGCTAGTGCTGGAAATGGAACCCAGAAGGTCGTACATTCTAAACAGGTGCTGTCCCGATGAGCTGTCTGCCTAGCCAACATGTCCCAGGGACAGGGCTCACATAGTCCAGGGATTGCCTTTAATTTCTTCTGAAGCCAAGGTTATCTTGAACTCCTCATCCTCCTGCTTCTACCAACTGAGTGCTGTGATCCCAGGTATTGTGCCGGGAGGGGGGGGAACCCAGGGCTTCCAGCACAAGTGGCAAGCCATAGCCCTATTTGAGGAAGTCATTCATCCTCAGCTACTCTAGAAAACCACTGGGCTATGCCTTAATGTGCAATTGCACCGTATTATAGCAACAATGCATTATTGTACATCATTAGTATTTAAATTCACATTCATTTTATGGAGTGAAGAAGAACCCTGTATTGAAGAAGCTCCAACAGATTCAATCCAAGCTTCTTGGTTTAAGGATTATTCAGGATCTGTTCTATTCAGGACAGTGAATATGGTACATTGACTAAGCTCGAGGTCAGCCATGTCTTCTCTCTAGAGGATTTACTCCCTCAAGGAGGCAATCAATGTAGGCCTAACGAACATCACATGCTGACCACTGCCCTCTGCCCTCTGGCCTTCATTCATCCTTGGTGCCTCTGCTTTGGGTTACTCGGTATTAGAACGATTTGAAAATGCTCTCCCGTCAGAGGAGAAACCAAGAGACGGAGGGGTTGCTTATGCCGACTTGGAGGTTAAAACGTTAGAAAGAGCAGGTCCCTGATTCCCAGCAGGGTCAGCGCCCCCTCCCATACGGGCTGAAGGATTGTAGGGGAAGGTCTTGGGACAAAGGTACCGGAAGGCATGAGTACCACTAGAGCCATAGAGCGGATCCCCGAATCAGAAAGCCTGGCGCTGTCTTCACGGGTAGGCATGCCTCCTTGAAGGCTCCCCCAAACCCCCCGTCCATGTGGATGGTTTGCTTGTGTGAGTTTCCTGTTTATGTTCCCAAGCAAAGGAAGGCAGAGCAGACAGGGAGCACGTCTATTTGCTCCCCCCCCCCTTATACTGACATTCTACATTCTCCACCAACAGAAGGGCTGTGGAGAAATGATTTAGTTCAGTGCTAACATTTTATCATCGGGGAAACTGAGGCACAGAAAGGAGACAGGCGTAGAACCTAAAATAACCATGTGTCCACTTGGAGGCCTGTGGCTCCTGGGCAGGAGTGAAAGAACTTCTGGGATCTGTGAAAGAGGAGTTAGACAGAGAGAGGCCAGTCTGGAAAGGAGTGATAGGAAGTTGGGGCTTCGGGAAGGTGATATCCATCCCCTGGTGGATCCCAGAGGAGGTAACCTAGCGTCATGGTCATGAGCAAAGTCTCTGCTATTTCTCAGAAAACCTTTGACCTCTGGGAACAGCTGCTGCCCACATCCCTACACCCATCAGCACCCCCATCAGAGGCTGGACATGATTTCTCTTCCAGCAGAGTGAGGCAGACCTCCCAACAGCACTGGCTCCCCTGCTAGTGGCCTTTCTAAGGGAAGCCACATGGCCCAGCTCTCAGCAGCGGGATGGCTCCCTTGGCTATACATTGACCATCATATAAATATCAGCAAAACTGAAGGGTTAAAGAAACAGCAGTCTCTATGTTTAAAGTCATGGATGGTCCTATACATGTGTGTGTATATATACGTATATATTTTTATATAATTCCATTGGCATGGTTCTTGCATTTTTTAAAAATTCCTGTGTGTGTTCCATGCATCACAGTATTAAAGACAACCAGGAAGATATTTATTTCTTTTTTTATTTTATTTTATTTTATTTTATTTTATTTTTTTTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCTCTTTTTTTAAAACATTAATTCAGTGTCTCGTCAATCATTACAAAACGTCTCTCCCCAAGGTTGCTCATAAACAGTTGCTACCTTGTATAAAAAATTCATTTGTGCCCTGGGTTAATGTGTCAGCAAGCCAGTGTCCTTGAGTACTCACTGTTGGTACCTGATGGTCCTCCAGGTGGCACACCCAGAGGCTGTAGTGAACCTGTTGGGTGAGCAGCAGCCATTAGCGTTCAGGTTTCCCATTCTTGGACAGTCCGAGGCGGTGATCTGTAAGGTTATGCTTGAACTGGACCAGAGTTCCTTTGTTTCTGTGAGATTTTGAAAAACAGAACTATCAGTTAAGTTTGAACTTGTAAAGTATTAGAGTATTTTGAGTGTCTTATATAAATTGTCACCACTTTTTCTGATCTATATAATTGACCTAAAGTGTTTGTTTTTACAAAAGGAAAAAAATGGTTTTTAATAAAGAGAATTTGAAAGCTTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014705:ENSRNOT00000054685:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.639
Domain overlap (PFAM):
C1:
PF121713=zf-C2H2_jaz=WD(100=65.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]