MmuINT0132656 @ mm9
Intron Retention
Gene
ENSMUSG00000043639 | Rbm20
Description
RNA binding motif protein 20 [Source:MGI Symbol;Acc:MGI:1920963]
Coordinates
chr19:53933882-53941570:+
Coord C1 exon
chr19:53933882-53934003
Coord A exon
chr19:53934004-53938569
Coord C2 exon
chr19:53938570-53941570
Length
4566 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CACTGTCCCTCTCTCCACAGAAG
3' ss Score
11.85
Exon sequences
Seq C1 exon
GAGTGGAGTTCGTGGTTCCCAGGACTGGCTTTTATTGCAAGCTGTGTGGCCTGTTCTACACAAGCGAGGAGGCGGCCAAAGTGAGCCACTGCCGCAGCACTGTCCACTACAGGAACTTACAG
Seq A exon
GTAACCAGCCCTCATGCTTGCCCCACCCACCATGAGGTCTTCCAGCCTTCAGTCACAAGCCAGGCACCCAGAGTCTCAGGCCTCACTCGCCTCTGACTTAAATGTCCATCTTCAAGGACAGGCATAGGGACTTGTCCTCTGGCATGCTTTTTCAGACGCGCTCCTGTAAATACATACCTCTTTGAGTATGCAGAGAGCACCTGGCTGCCAGGCTTCATTCTAAGAACACACTCAGAGCATCCATTCCACCATGATGGTATTTAGACATCTGCCACACCCAGTGAGGCGGAGCGGAGTCAAGTTCCAAGCTCTGCTGTTAATCTTCTGTAATCCTCTGACACACGAGAAGCCAGGCCTGGGGGCTTCAGATGCAGGTATTCCTGGGTCTCTTCCTCCGTGCAGATAACTTTTTTTTTTTTTACACTGGAATGAAAATCATAGTTTTGCCCCATTTAAATGTTCAGATGGCATAACAAATGGTTGCCTCGGGCTGCTCACGAACCCAGACCTGTTCTAGGCTCTGTAGAAACAACAGCAGCAGATGTAGACTAATCCCTCTTTAGGGCTTCCTGTCCAGTGTAGGATACCAGTGCAAAACAAAATAGCCAACACATGCTCTATATTAAAATATCACTTACAAATATACTAAACCCACAACACATTTCATCCAAGCTAAAATGCCTCTATTTGTAAATACCACTTTTTCCATGTTTATTCTTTGTCACAGGGGGCATTGGGCCTTTAAATATACTGGTCGCACACTCTGCCTCTGAGCCACATCCCCAGCCGGATACACGATTTCAACACCAATTAGGAAAAGTGATACAGCAAATTAGACAGTGAGACTCTATCAATTGTAAGAGGCATTTTTATTTCAGAGATGTGTCTTAAAGTCAGAGAGCAATGCTGATGGATAGTCACCATTCTGCCAAGGCCTCGGACAGAAACCCTGTCTGAGATGGCAGAGGCTCCTGGCTCCCTGATGGGCAAGCCAGGGAAACGTGAGCTGAGGTGAGATAGAACTGAGGTGATGTCTATACCTAATGTGATATAGGTTTCATGATTAAGTCCTGGCACAGGCTGGGTTTTACATGTATTTCATTTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGGAGGGAGTAAGGGAGAGGTATGGGTACTTCAAGACAATTCAAGACAACTGCATTTTTACCGTCAGAACCAGAGTTGGGAGGTAGGGAGCTGGGTCAGGCAGTAAAGTGCTTGCCATGTACAGCTGAGGCCCTGCATTTGGATCTTTGGCACTCACGTAAAAGCTGGCCATGATGTAATGCACACCTATAATCCTAGCCCTGGGGAGGCAGAGACAGAAGAAACTCTAAAACTGACTGGCCAGACAGTCTTACCAAGTTGGCAAGGTCCAGGTTCAGTGAGAGACCCTGTCTCAAAACACAAGACAGAGTGACAGAGGCAGACACCTAATACTAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACATACACACACACACACATACACACACATGTATACACATATACACACATGGACACCACACACTAAACAAGTAAATAATTAACCAGTGTTTGAGCCACATGGTTCAATCCAAGAAGCGCGTGTAGTGTCTCAGTCCCTGTTTCAGGGCAGACATTCCTCTCATCGTTAACCTTTCAGAGTAGCTGATCTGATGGTGGGTTCTTTTTAAATCGTGCGTGTGTTATTTTGTTTTTGTGCTCGAGGTAGGAGCATGCATGTGGAGGTCAGAGGACAGCTTAAAGACATCAATTCTCCCTTCTACCATTTGCATTCCCAGGATCAAACTCAGGCCCTCGGGCTTAGAGACACTCACCCCTGCCCACTGAGCTGTTTCGCTGGACCTTAGCTAGCGGTTCCTAAGCAGGAATGTGAGGCTTGGCATATATGCGATAAGTCACATACTGGGGTGGAGTGGTAACGGGAACATGAGCTCCCGGAAGGGAGCAGCTGCTCTATGACCACAGAAGTCAAGGACCAGCAAGGAGGACTGTCTCCATTCAGGGAGGAAAGGGAATAGAGGCCTGGTTTGGCCAGGGCAGGGATCTCAGGCTGGGCCCTACAGAGATGCTTGTGGACAGTCATCCAGCCTAAAGAAATCAACCTTCATAGACCTTTTGCACGCCAGGAGGGAGGGTCATGGGGGTACTCAGGTCCTGATTTCCCATCAACTTAGCTGGCATCTTTTAAAAATGCATCTTCTTTGAGCCTACCCTCCCTGCTTGCTTATTCCTTTTAGTGTAGACCTAGGAATCTTCACTCTTAAAATTGTATGGTGCTGAAGATCAAATCCAGGGCTTTGGACACACTAGACAGAGGCTACACCACTGAACCCCATAGCAGGGCCAAGAACCTTCATTGTCACAGTCTTCCTGGGAATGTCTTAACTCCTCAGTGTGACCCTCTTTGGAGGAATTGTGTAGCCCCCCCCCCCCACCAAGGAGACCCCAGAGTTCAAGCTCACTCTCACTAAGAGATGAAGGAAGAACTCAGAGACTTTTGGGGCAGTGGCCTGCACTGTGTTCAGGGCCTCTAGGGTCAAGCTCCAGGCAGCCTCCCAGGGCCACAGCAGGGCACCACCCATGTGCTCCCAAGATATGCGCGCGTGCGCGCACACACACACACACACACACACACACACACACACCTAGATGCATTGGGCGTAGATGGTGCCTCGGGTCCTCACTCCCTCCCACCTCAGCTCACGTTTCCCTGGTACACCTTTTATCAGGGAGCCAGGAGCCTCTGCCACAGCCATCTCAGGTAGCGTTTCTGTCAGGGGCCTTGGCAGAATGAATGCCTCAGTCTCTACAGCCTCTCCCACTTTACTCCAAACCACAAGTGTGAAAAGTGAAGAAGTCTGACCCACAGGGCAGGTGCCAGCTGACTCAAGTCAGGCAACTTAGAAAGTTAGCATTCATCAGGAGACCTTGAGTCGGGGGTCCCACTGGGGATGCCCTGGGAGGCAAGAGCAGGTCATAGCTGCCTCAGTGAAGCCTCTGGAAATCCCGCTATGCTGTTGCTGGTCATGGCTCTATGTGAGCCTACAGGGGGTGATCTGGCACAGTAAGCATAGCCTTACTGGGCATGAAGGTGGCTGCAGGCTCCCAAAGAAGAATGCATACATATGCAGGGCGCTTATCCCCTCAGAATTCGCGAGTCAAACAGAGAAGAAATCAGGGCTCTCCAGCAGCAGCCTCGCCCACAGGCATCTGCTAGGGGGCCCTTCTCCAAGTTAGACTACCCCCACTTCTAAAAACTACAGTTTCATAGCAGGAGGAGAGTGAGGATGATGCCATTGCTCTTACTTAACAGATTTGTTGGGGGGGGGAATGGGAGGGGTGGAGAGAGGTGAGGGACTCCCCCCATCTTATGTCTGGTTCACCTCAGCCTGACATTCCTGAGTATTGACGGTGTCCCCGGCAAATCTTTTGTGAGGCATCTTGTCAGTTCCCCACTCACAGGAAACACTGCCCCCACTCCCTGACTCCTTGCGAGGTTGTCATGGTTACCCTCACTAAACAGACATCAGGGTGATTCAGTCACTTGCCTGCAGAGATGGAGGATTTGAACCCAGGACATCTATTAGCTGGACCTGACCCTTTCTAACTACCAAATGAAGCACTGCTTGGATTGCTCTTACTTTTCCAAGACATTCAGGCCTCTCCTCATCTGATCTCACAGCACCGATCCATGTATTACAAACACAGACCAGCCCCAACTGGTTTATTAGTCATGGCTGATCACAGCCCTGAGTGCTCCCAGTACTGTGGAGGTAGTCCTCCACTAGAGACAGGTCATGCTGTTTTTCAGTCCACTGAGGGTCTCTAGGCCTTCCCCCCTACAGGTTATCCTATAGGATTGTTGGGCATCTCCAATGTCACCACGTCACCAAGGGCCAGCCCTGGGTTTCTGCTACCTGCCACCTCCCCTCCTTCTGTCACTCTCTCTAGAAAACAGATAGCATTGTTGTGAAGAATGAGCTCATGTAAGCCAGGCAGTTAGTGAGTGCTTGGCAATAAGTGGGGGCCAGAAGGTTGCTTGCTATGGTCAGTATCTATACTTTTCACTTTTCTCTCAAGAGACTTACAATATCTGTAAACTAATATGAGGTCCCATTGCCCTAAGATAGCTGGAGAGGGAAGACATGGCCCCAGTGGTCCAAAAATGATAGCAAAGCAGTCCTACACACACACACACACACAGAAACAAACATACACACACACACACAGAGACAGACAGACAGAGACAGACAGACACACATACAGAGACAGAGAAACAGAGAGATATGAACACACAGGCGTACATGCACACACACAAAGAAACAGACAGACACACACATACACACAGAGGCAGATGGACACAGAGAGAGACAGAGAGACAGAGAGCTACACACTCATGGGCGCATGCACGCACATACAAACACACACACATCACACCCACTGACATCTCTTTGTCTGCACTGTCACACTGTCCCTCTCTCCACAG
Seq C2 exon
AAGTACCTGTCTCAGCTGGCAGAGGAGGGCCTGAAGGAGACGGAGGGGACAGACAGCCCAAGCCCCGAGCGTGGTGGGATTGGTCCACACTTGGAAAGGAAGAAGCTATGATATCGGCGCTGCCACCGTCTCTGGAAGATGGATGGGAAGCCTGCTGAACTAAGGCCAGCCTGGCCTCAGGCACAGAACTGAGACCAGAGAGGACGGAGAGCCAGGCAGGACATGGTGCTTGGGCTTGCAGAACAGGCTGAAGTCTCTGGGAGCTGGGCTCACCCTTCCGGGCCCAGCCACCGAGGGTGACCAGCTTCCTGTGGGTTCCTGGTTCTTTTAGTCTGTTTTTCCTCTCTCCCTCTCACCTATCCCTTCTGTGCCAAAGTTCATTTCCTTTTCATAAAATCCAGCTTCTCAGGGATTGTCACTGTGTTTCAAGATTTGATTGGATGTGGTAGGTCGGTCGATGAGGCTGGGTCACTCAAGGAGTAAGTTTAATGGAAGGCCTTGACTTAGTCACTTCAGTGCACCTGCGGTGGCCTTGCAACCTGGTTTCTGTGGGTCCCAAGGGTAGGAGAGCTGAGTCAGGTTCTGTGCAACCAAGGAATCGCTTGGCAGAGGTGGAAGTGGTTTCACTAGGATTTCCTCCAGGTGGATCCCGCCATTTTGAAAAGGCATCTTTGTCTTTTGTTTCAGTCTCAGACGAGTGCTGGGAGCCGAACCCAGAAGCTTGTACATTCTAAACAGGCGCTCTACCACCGAGCTATAGATGCCAGGCCAGAACGTCCCAGGGTTTTGTTTGGAGACAGGGCCCATGCAGTCCAGTTTGTCTTTAGTTTCCTCTGGAGCCAAGGTTATCCTGAACACCTCATCTTCCTGCCTCTACCTCTTGAGTGTTGTGATCACAGGTACCGTTCTGGAGGTGAAACCCAGGGCTTCCAGCACAAGAGGCAAGCATACCCCTATTTTTAGGAAGCCATTCATCCTCATCCTTGGCTATTCTAGAAAAATCACTGGGCTAATGCCTTAATGTGTTATTATACCATATTGTAGTAGTCATGTATTACTACACATTATTAATAATAAATTCATATTTATTTTGTGAAGCAAAGAAGAGCCCAACAGTAAAGAAGCTCTGATAGATTCAATCCAAACTTCTCAGTTGGAGGATGGTTTGGGATTTGTTCTATCCAGGACAGTGAATTTGGTATAGATTCACTTTAATTAAACTTGAGGCCAGCCATGCCTTCTCAAGGAGGAGATAGATGGCGGGCCTACAGCGCATGCTGACCTCTGACCTCTGCACTGCTGACCAGCATCAGCTTAACCCAGGAACAAGGGACTGGCATCTGACCTTCCTTCATCCTTGGTGCCTCTACTTTGGGGTAGTTGGTATTAGAATGATTTGAAAATGCTCTCCCAATCGAAGGAGAAACTAGGACACTTGGCTTGCTTGGTTCTTGTAGGTAGGGGTAGGGGATGGAGGGACTGCTGATGCCAACTTGGAGGTTAAAACGATAGAAAGAACTGGTCCCTGATTCCCAGTGGGGTCAGTACCCCCGTCCCGTGTGGGCTGTAGGGTCTTAGTGGAAGGTCTTAGGACAGGGGTACTATAAGATATGAACTCCACTAGTGCCACAGAACAGACCCCAGTGTCAAAGAGAGCCTGGCACTGTCTTCACAGGTGGACACGCCTCCTTGAAGGGGCCCTCCATGTGGATGGTTTGCTTATATGGTCGCCTGTTTATGTTCCCAAGCAAAGGAAGGTAGTTTAGATAGGGAGCATGCCTCCCCCCCCTCCCCTTATATTCCATTCTAGACTCTGCACAAACGGAAGGGCGATAGAGAAATGATTTAGTTCAGCGCTGACATTTTACCAGTGAGGAAGCTGGGGCACAGAAAGGAACGGGGCATAGAACCTAAAATAACCCTGTGTCCACTTTGAGGCCAGTGGTTCCTGGGCAGGAGAGAACTATTGGAATCTATGAAGGAGGAGTTAAGGCAAAGAGGGGCCAGTCTGGAAAGGAGTGACAGGAAGCTGGGGCTTCAGGAAGATGTAACCCGTCCCCTGGTGGATCCCACAGGAGGTGACCCAGAGCTGTAGTCATGAGCAAAGTCTCTTCTGATTCTCAGAAAACCTTTGACCTCTGGAACAACTGCTGGCCACATCCCTAAATTCATTAGCACCTCCATCAGAAGCTGGGCGCTTGATCTTCCAGCAGAGTGAGGCAGACCTCCCAACCCCACTGGCTACTCTGTTAAAGCCTTTGTACGGAAAGCCACACGGCCCAGTTCTCAAGCAGTAAGATGGTTCCCTTGGTTGTAAATCGACCTTCATATTAGCAAAACCGAAGGGTGAAAGAAATGGCAGTCTCCTTTACATTTAAAGTCATGGATGGTTCTATATGTGTGTGCGTGTACATATATACATATATATTTTTATATAATTCCATGGTCCTTGCATTTTTTTTTACTCCTGTGTGTGTGTTCCATGCATCATAGTATTGAAGACAACCAGGAAAATATTTATTTCTTTTTTAAAACATGAATTCAGTGTCTCATCAGTCATTACAAAGTGTCTCTCCCTGAGGTGGCTCATGAAAGGTTGCTACCTTATACAAAGAATTCATTTGCACCCTGGATTAATGTGTCAGAAGGCCTGTGTCCTTTAGTGTCACTGTCAGCACCTGGTGGTACTCCAGGTGGCACACCCAGAGGCTTTTGTGAGCTTTTGCTATGAGCAGCAGCCATTAGCGGTCAGGCTTCCCATTCTTGGACAGTCCGAGGCGGTGATCTTTAAGATTATACTTGAACTGGACCAGAGATTGTTTTTGTGAGATTTTGAAAACCAGAACTATTAGTTAATTTAAGTTTGAACTTGTAAAGTATTAGAATATTTTGAGTCTCTTATATAAATTGTCACCACTTTTTCTGATCTCTATAACTGACCTAAAGTGTTTGTTTTTACAAAAGGATAAATGGTTTTTAATAAAGAGAATTTGAAAGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043639-Rbm20:NM_001170847:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.722
Domain overlap (PFAM):
C1:
PF121713=zf-C2H2_jaz=WD(100=65.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: