GgaINT0042135 @ galGal3
Intron Retention
Description
NA
Coordinates
chr6:27580850-27584889:+
Coord C1 exon
chr6:27580850-27580971
Coord A exon
chr6:27580972-27584668
Coord C2 exon
chr6:27584669-27584889
Length
3697 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TGTTTCTGTTGTGATTGCAGAAG
3' ss Score
6.68
Exon sequences
Seq C1 exon
GTGTGGAATTCGTGGTGCCTAGAACTGGGTTTTACTGCAAGCTCTGTGGACTTTTCTACACAAATGAAGAGACGGCAAAGACAAATCACTGCAGAAGTACTGTCCACTACAAAAATCTTCAG
Seq A exon
GTAAAAACACACGTGAAAATAGCCCATAACTAGATTTTGGGGTGGGTCGGGTATAAGATAAAGATAGTGGTGGTAGTAAAATCAGTTTCTGTGCCATGGGCAGAATTCAGAGTGAAATTTAAGTAAACAAAACTTTTCAGTAGTTCCATACTTGACACCCTAATTTTTGACTGCCAGGCCCCTGCCATCAACTTAGGGATCATAAGTAAAATGGGGCCAGCTGATAATTGTATCTTCTCATACACACTGGATCCTTATTACGAGCTCAGCAAGTGACTCAAACCTTTAGTTACCCATTGCTAAGAGTCCCAGATGTTTGAGCTGTTGGGAGTGAGCCCAGCAGCAGCCTTTATTATCTCTTAGTTTCAGGAGCCCTGAACATGCCACTTGTTTAATAACTTTGCCATTCTTGCTTGGTATGAGCATAAACTCCTGCAGCATGTTTGGGCACGCAGTACTCTGATGCACAGGCTCTCCTGCTGTGACCTGCTGACATCACCTCCCTGTGCTGCGGAACAACATGGCAGTTCAGCCACAGAGAACACCACCACTGAATAATTTCTGTAAGGATATGTAGAGGCATGTAATCACTTGTGTGGTTTCCATAAGTGTATACCATCAGTCCTTGATAACAGCATGAAGAGACCACGGGCACTTGCCTTTAAATGAAATTTCCTGCCTTTATCACTTTTCAGATGTACAGTTGATAGTATCAGTTACAGCAGCACAAGCATCGTGCCTAATGCTAAGGACTCAGTGGAGGAGCCAGCCTTGCATCACATCTCCTTGAGTTCATGCCCATGTGTAGGGTGTGTACACTGCAGAAGACACTTCTATTAGGATGCTCTGAGACAGTTAAGAGTTCTTATTAGATGCTTTTATTGGAATTCACATGCTCACAAAAAAAAATAGCATGAAAGAATATGACTGTCCCTTCTTTCTCTGTTCCTTCCCTCTGCCCAGAGCAAATGCTGGAGCTCTGCTTTTCTTCAGATAATAGTCATTTTTTCCTAGCTGGCTAATAGGCACTAGCCCTTCTGAAAAGTTTTTTTAATGAGACGTGGTTTCTCTGGAAGAATTTTCTTCTCAGACCTCTGACTATCAAAGACTGCCTGTAGAGCTGCTGTCCTTGCTAATGATGGTTCCTGTAAGTGTAATCTCAAGGAGCAGGTGCCCAGTTCACATATCTTTCTTTGCTTCTTTCAAGAAAATCCAGAGAAATTGACCAGAGGTAGCAGCACTCAGTACTTGCCCTGTATCCCATGCACGTGTCCCAAAGAAACTTTGCTTAAGCAGAGGTTGCAACTCCAGCCCCATGTAACAAGTCCAATGGCCATTTTCACTTTTGAAGTTATTTTGTCAGTCATAGAAAAAAATGTCCACATAAAATTGAGAGAGCATGGAAAAAAAATCTTTTTCTCCCATTATATGTTTCCCAGGAGCACTGCAGTAGATATGTAACTCTGACTTGAGATAAAAGCACAAAGACAGCAAACACTGTTAAAATTAAATCTGTCAAATATGTTAATAAAAACATAATGTTCTGTAGAGCCTTATCTTCTTAAATGGAGGAAGTATACAGCTGATAAATAACCATCCAACTTTTGCCCACTCAAATGGAAGTTCAGCAAGTTTTTGCTTTGTGTTTCTAGAACCATGTTAATTATGTACTCTGCAAGAAATATCAGTCTTTTAGGGTAGTGCAATTTGATGAGTGTATCCAGCAACATAAGAACTGTGGACTCTAGCTGCATCTGAAGCTATGGGACTGCTCTGCAGAATGTCATTCTGCTGTCTTGCCCATGTGACAAATGCCACTGTCTGATGCCAGCATCGTTGTCCCAAATGCTTTCATGAATACGAGTCTTTTCCGGTTGATTTGCCCCATGTCATCTTTTGCACGACCTTCTTGGAGCCACATCCAGAATATATATTCAGTGTTTGGATTTTAACACAAAACTGAACAGTTTGTTTAACAGTTTTCTTCCAAAAACCTCACTTAGGTGATGAGTAAAGTAGTCACCTTTACCTCTTCATGTTGTTGCCCTTGAAGAACAGCAACCAGTGAACAAATTTCAACTGTTTCCTCATCAGCCTTGCACACTTTTTGTCCTTTTCCATTCTCTTTGGCTTAATACATAATTTCCCAGGTGATATTTATATTCACAATCCACTGCATTTTCCATGTCCAAAAGATCTATCATTCGGCCTTCCCTCCTCCACGTATCACACCGAGCTGTCAGATTCATCTGGTGTAAGCTAGCTTTGGCAGTTCCGTGCAGCATTTTATCCTGTTTACCCCTAGCTTTATGCAGTATTTATCAAAACTTGTATTTAAAGGAAAAAATATACATATTTTTTCCCTAGACTTTTATTTTCCTATAAATGCATTTGAATGTCTGATTTGTGAACTTCAAAACTGGTGACAGCTGACATTAACATCAGCTAAAGGTGATGGATAAACCTCAGTCTTATTTTGGTAGGTAGTCATTAAAACCCAGAAATGTATGGGTTATTTGATCCAACAAGTGTTAGGGATTTGTTACAGTTCATGATGTACAGACCCCTTGTAATCTTTATGGATTCTATATCTTTGTATACGCCTGTAACATTTACTCTGGCCTTCTGCCACATGGAATTTTGTACCTGGGAGCCACAATCAAGAGTTGTGTAACTTCTACTCCCAAGTCAGGTTAACGGGGGCGCAGTCATCATTTTGTCACAGTTACGCCTACTCTTTACATTTACTGTGTCTGTTTCAGATGTACCTTTTACATCCACAGCTTGTATTTACGTGAGACAGCCTGGCAGTCATAACATAGCCCCTCGTTTCTTTACATTCATTTCCCATTCCTCCTATTTCTCATGGAGGTCCAAGAGTAAACTCTACTCTGGAGGAATCCTGCAACTAGATAATGTTAGTATGACCACATTTATATAACCGTGTAGGTATCTGTGTAGACCAGCTGCTGATGAAGCAGCTTCTTTCCACCTATTTCTACATCTGTTGACCGTGAATAAATACTTTGAGCACCATTTTCCAACCTACATTAATTGGTTCATCTTCCGTTTCTACTAACAGTGCTTTCAGAAGGTTGGAAGCCTCACAGGCCTTGTCTGTATTTTCAAATCATGCTGAAATGCTTTTTCTTAGAGTAGCACAATACACACAGATACTCTAGCCAGAGTGCTAAATGTTGTTAATTATTGAGTTTGGTTTGTCTCTTAATACAAATATTCTTGTGCACAAGATACATGTCTAAACTGGAAGTGCTGAAAATGTAATATATATGCTTTAAATTATGACTCAGAATCTGTATCTACTTTTTTACACAGCAGTCTTACCCTGGTATAATTTAGTTGACTCAGTGGGGTTGGTTGCTGCGCTGTATCATACAGGAGCTGTGAGTTTGCTTGCAAATAGAAGCGAGGTCTGGTTACACAGACTGATGGGGAGTTGTGATCTTTCTGATTCTGACAGCAATTCCCCTTGTGGCACAAGAGTAAATGACAGAACTTTCAAATCTATGGATTAAGCGTTTTACCTGGCTTGAATATTCACCAGAAGGGGAGTTCTGTGCATATTCTTCCATTCTGAGGTGCTGGGATTGTGTAAGAGCTCTGAAGAGGAGTAGAGCATTCTGCGTTGAGTGTTCTCAGTTTTAATAGAGATGGTTTGTTTCTGTTGTGATTGCAG
Seq C2 exon
AAGTATCTGTCCCAGCTTGCAGAAGAGAGCCTGAAAATGAAGGAAGAAGACAGCCACCTGCTTCAGGATGACACTGGAATTGTTCCTCACTTTACAAAGAAAAAAATATGATGCGGATGAGCTGGAAGAGCCATAATGAGTGAATGCTGATATATTTTTTAATTTTATTTTCTCTGATATAACTGTCAATTTGCACTGTACAGAGGAGGGGAAATAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023527:ENSGALT00000039061:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF049887=AKAP95=FE(30.1=100),PF121713=zf-C2H2_jaz=WD(100=65.9)
A:
NA
C2:
PF049887=AKAP95=PD(18.0=64.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]