GgaINT0042135 @ galGal4
Intron Retention
Gene
ENSGALG00000008697 | RBM20
Description
RNA binding motif protein 20 [Source:HGNC Symbol;Acc:HGNC:27424]
Coordinates
chr6:25661878-25666822:+
Coord C1 exon
chr6:25661878-25661999
Coord A exon
chr6:25662000-25665696
Coord C2 exon
chr6:25665697-25666822
Length
3697 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TGTTTCTGTTGTGATTGCAGAAG
3' ss Score
6.68
Exon sequences
Seq C1 exon
GTGTGGAATTCGTGGTGCCTAGAACTGGGTTTTACTGCAAGCTCTGTGGACTTTTCTACACAAATGAAGAGACGGCAAAGACAAATCACTGCAGAAGTACTGTCCACTACAAAAATCTTCAG
Seq A exon
GTAAAAACACACGTGAAAATAGCCCATAACTAGATTTTGGGGTGGGTCGGGTATAAGATAAAGATAGTGGTGGTAGTAAAATCAGTTTCTGTGCCATGGGCAGAATTCAGAGTGAAATTTAAGTAAACAAAACTTTTCAGTAGTTCCATACTTGACACCCTAATTTTTGACTGCCAGGCCCCTGCCATCAACTTAGGGATCATAAGTAAAATGGGGCCAGCTGATAATTGTATCTTCTCATACACACTGGATCCTTATTACGAGCTCAGCAAGTGACTCAAACCTTTAGTTACCCATTGCTAAGAGTCCCAGATGTTTGAGCTGTTGGGAGTGAGCCCAGCAGCAGCCTTTATTATCTCTTAGTTTCAGGAGCCCTGAACATGCCACTTGTTTAATAACTTTGCCATTCTTGCTTGGTATGAGCATAAACTCCTGCAGCATGTTTGGGCACGCAGTACTCTGATGCACAGGCTCTCCTGCTGTGACCTGCTGACATCACCTCCCTGTGCTGCGGAACAACATGGCAGTTCAGCCACAGAGAACACCACCACTGAATAATTTCTGTAAGGATATGTAGAGGCATGTAATCACTTGTGTGGTTTCCATAAGTGTATACCATCAGTCCTTGATAACAGCATGAAGAGACCACGGGCACTTGCCTTTAAATGAAATTTCCTGCCTTTATCACTTTTCAGATGTACAGTTGATAGTATCAGTTACAGCAGCACAAGCATCGTGCCTAATGCTAAGGACTCAGTGGAGGAGCCAGCCTTGCATCACATCTCCTTGAGTTCATGCCCATGTGTAGGGTGTGTACACTGCAGAAGACACTTCTATTAGGATGCTCTGAGACAGTTAAGAGTTCTTATTAGATGCTTTTATTGGAATTCACATGCTCACAAAAAAAAATAGCATGAAAGAATATGACTGTCCCTTCTTTCTCTGTTCCTTCCCTCTGCCCAGAGCAAATGCTGGAGCTCTGCTTTTCTTCAGATAATAGTCATTTTTTCCTAGCTGGCTAATAGGCACTAGCCCTTCTGAAAAGTTTTTTTAATGAGACGTGGTTTCTCTGGAAGAATTTTCTTCTCAGACCTCTGACTATCAAAGACTGCCTGTAGAGCTGCTGTCCTTGCTAATGATGGTTCCTGTAAGTGTAATCTCAAGGAGCAGGTGCCCAGTTCACATATCTTTCTTTGCTTCTTTCAAGAAAATCCAGAGAAATTGACCAGAGGTAGCAGCACTCAGTACTTGCCCTGTATCCCATGCACGTGTCCCAAAGAAACTTTGCTTAAGCAGAGGTTGCAACTCCAGCCCCATGTAACAAGTCCAATGGCCATTTTCACTTTTGAAGTTATTTTGTCAGTCATAGAAAAAAATGTCCACATAAAATTGAGAGAGCATGGAAAAAAAATCTTTTTCTCCCATTATATGTTTCCCAGGAGCACTGCAGTAGATATGTAACTCTGACTTGAGATAAAAGCACAAAGACAGCAAACACTGTTAAAATTAAATCTGTCAAATATGTTAATAAAAACATAATGTTCTGTAGAGCCTTATCTTCTTAAATGGAGGAAGTATACAGCTGATAAATAACCATCCAACTTTTGCCCACTCAAATGGAAGTTCAGCAAGTTTTTGCTTTGTGTTTCTAGAACCATGTTAATTATGTACTCTGCAAGAAATATCAGTCTTTTAGGGTAGTGCAATTTGATGAGTGTATCCAGCAACATAAGAACTGTGGACTCTAGCTGCATCTGAAGCTATGGGACTGCTCTGCAGAATGTCATTCTGCTGTCTTGCCCATGTGACAAATGCCACTGTCTGATGCCAGCATCGTTGTCCCAAATGCTTTCATGAATACGAGTCTTTTCCGGTTGATTTGCCCCATGTCATCTTTTGCACGACCTTCTTGGAGCCACATCCAGAATATATATTCAGTGTTTGGATTTTAACACAAAACTGAACAGTTTGTTTAACAGTTTTCTTCCAAAAACCTCACTTAGGTGATGAGTAAAGTAGTCACCTTTACCTCTTCATGTTGTTGCCCTTGAAGAACAGCAACCAGTGAACAAATTTCAACTGTTTCCTCATCAGCCTTGCACACTTTTTGTCCTTTTCCATTCTCTTTGGCTTAATACATAATTTCCCAGGTGATATTTATATTCACAATCCACTGCATTTTCCATGTCCAAAAGATCTATCATTCGGCCTTCCCTCCTCCACGTATCACACCGAGCTGTCAGATTCATCTGGTGTAAGCTAGCTTTGGCAGTTCCGTGCAGCATTTTATCCTGTTTACCCCTAGCTTTATGCAGTATTTATCAAAACTTGTATTTAAAGGAAAAAATATACATATTTTTTCCCTAGACTTTTATTTTCCTATAAATGCATTTGAATGTCTGATTTGTGAACTTCAAAACTGGTGACAGCTGACATTAACATCAGCTAAAGGTGATGGATAAACCTCAGTCTTATTTTGGTAGGTAGTCATTAAAACCCAGAAATGTATGGGTTATTTGATCCAACAAGTGTTAGGGATTTGTTACAGTTCATGATGTACAGACCCCTTGTAATCTTTATGGATTCTATATCTTTGTATACGCCTGTAACATTTACTCTGGCCTTCTGCCACATGGAATTTTGTACCTGGGAGCCACAATCAAGAGTTGTGTAACTTCTACTCCCAAGTCAGGTTAACGGGGGCGCAGTCATCATTTTGTCACAGTTACGCCTACTCTTTACATTTACTGTGTCTGTTTCAGATGTACCTTTTACATCCACAGCTTGTATTTACGTGAGACAGCCTGGCAGTCATAACATAGCCCCTCGTTTCTTTACATTCATTTCCCATTCCTCCTATTTCTCATGGAGGTCCAAGAGTAAACTCTACTCTGGAGGAATCCTGCAACTAGATAATGTTAGTATGACCACATTTATATAACCGTGTAGGTATCTGTGTAGACCAGCTGCTGATGAAGCAGCTTCTTTCCACCTATTTCTACATCTGTTGACCGTGAATAAATACTTTGAGCACCATTTTCCAACCTACATTAATTGGTTCATCTTCCGTTTCTACTAACAGTGCTTTCAGAAGGTTGGAAGCCTCACAGGCCTTGTCTGTATTTTCAAATCATGCTGAAATGCTTTTTCTTAGAGTAGCACAATACACACAGATACTCTAGCCAGAGTGCTAAATGTTGTTAATTATTGAGTTTGGTTTGTCTCTTAATACAAATATTCTTGTGCACAAGATACATGTCTAAACTGGAAGTGCTGAAAATGTAATATATATGCTTTAAATTATGACTCAGAATCTGTATCTACTTTTTTACACAGCAGTCTTACCCTGGTATAATTTAGTTGACTCAGTGGGGTTGGTTGCTGCGCTGTATCATACAGGAGCTGTGAGTTTGCTTGCAAATAGAAGCGAGGTCTGGTTACACAGACTGATGGGGAGTTGTGATCTTTCTGATTCTGACAGCAATTCCCCTTGTGGCACAAGAGTAAATGACAGAACTTTCAAATCTATGGATTAAGCGTTTTACCTGGCTTGAATATTCACCAGAAGGGGAGTTCTGTGCATATTCTTCCATTCTGAGGTGCTGGGATTGTGTAAGAGCTCTGAAGAGGAGTAGAGCATTCTGCGTTGAGTGTTCTCAGTTTTAATAGAGATGGTTTGTTTCTGTTGTGATTGCAG
Seq C2 exon
AAGTATCTGTCCCAGCTTGCAGAAGAGAGCCTGAAAATGAAGGAAGAAGACAGCCACCTGCTTCAGGATGACACTGGAATTGTTCCTCACTTTACAAAGAAAAAAATATGATGCGGATGAGCTGGAAGAGCCATAATGAGTGAATGCTGATATATTTTTTAATTTTATTTTCTCTGATATAACTGTCAATTTGCACTGTACAGAGGAGGGGAAATAAAGAGCATCTTCCATGCACCTATGCCCAGAGTGCCATTAAAAACCAAAATGCCTGAAACTGTTTCCCACGGTGAAGCAAAGCTGGCATATCTGTACCAAGTGGAGCAATTCTTTCTCACACTCTGCACGTTGGGAGTGGTTTCCTAGATTAAATCAGAATTCTCAGGGATTCTTCAGGTTTTAATTCTGATGTGACACATCAGGTCAGGAGGAGTATTTAGAAGCACTCAGCATCCTCCAGTGGACGCTGGAAGGAAAGGAGATGTGACTATAAATAGGCTTTAATGTTGCTTAAAGTGTCTGCAGTCATTTTGCTCATTACCCCAGTGAGTAGGATTAGTGAGTAGGATTTGCATAGGACATCTAAAGCCATTGTGCTAAAACTAATCTGTAGATGGCATCGTGTAAACCCCATCAGCATCCATCTCCATGCGTCTTAGAGCTGGGTGAAATGATAGATATTTGTGTTGTTAAGCACTGACTGTGTTGTATGAATGCAGAGGGAGCCGCAGTCTCTGCCCAGGGACCTTATAGCCTGAGCCCAGCACAGCGAGAGCAATTCAAACACACGTGCTGGCAGCTCTGGATTTCAGCATTTCCTATGGCGTGATCAGGGTGTTCTCCACATGCTGTTGTGTTTGAAACTCTTCTCTTTGACGAATCTAAAGAGTGCCAACTTTGAGTCTTACAGACTTGAAACTCTCATGGGAGGCTTTTTAAAGTGCCATGTGTTTGGACCATGTTGCTTTTAGACATTTTCCTTGAGACTCCTGCTTTTGGAGTCTTCCTGTTTTCTTTTCAGAGCTGCTTTTCCTTGGCTTGGAGATGTTGAATTTTCTTGGTTTTCATGGAAAGATGCCAGACTTTTAATATTGTTTTCGTATTTTATTTCCCTGATTTTTTTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008697:ENSGALT00000014156:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF121713=zf-C2H2_jaz=WD(100=65.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]