RnoINT0127626 @ rn6
Intron Retention
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116844470-116844747:-
Coord C1 exon
chr8:116844686-116844747
Coord A exon
chr8:116844542-116844685
Coord C2 exon
chr8:116844470-116844541
Length
144 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TGTTTTCCCATCCCTCGAAGGGT
3' ss Score
7.16
Exon sequences
Seq C1 exon
TGGTGGAAGAACTGCAGGTCCAGATCCTGAAGCTGCTGTTGGACAACAAAGATGACAATGGG
Seq A exon
GTGAGTGGCCCAGGGCTCCTGTGTGGCTCTGTGACTTGGAGGTTTTGGGCTGTTTTGGGCTGGTTTATGTTCGTCTGGTAGGGCGCAGGGTAAGGTACAGAGTCCACACCTCAGCACAGCCCCTTGTTTTCCCATCCCTCGAAG
Seq C2 exon
GGTGAAGCTTCTCGGTACATCTTTCTGACAAAATTCCGAAAGTTCCTGCAGGAGAATGCCAGTGGCCGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378:ENSRNOT00000043825:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAGAACTGCAGGTCCAG
R:
CTGGCATTCTCCTGCAGGAAC
Band lengths:
122-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]