GgaINT0022707 @ galGal3
Intron Retention
Gene
ENSGALG00000002486 | RNF123
Description
NA
Coordinates
chr12:2190068-2190642:+
Coord C1 exon
chr12:2190068-2190167
Coord A exon
chr12:2190168-2190616
Coord C2 exon
chr12:2190617-2190642
Length
449 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
CTGCCGTGTCCCTGTTTTAGTGG
3' ss Score
9.42
Exon sequences
Seq C1 exon
GGCAAGGAGAGTAAGGAGGTGAAGGAGGAGAGTGCTGAGGAAAGACTGAGGCGGCGGGCGTATGAAAGAGGCTGCCAGCGGCTCAAGAAGCGCATTGAAG
Seq A exon
GTCTGTGAGGAAGGAGAGAGATTGCCAAGATCCCATTCTTTGTGTGCAGCCAGAGGGACCAACCCATGGGTTGTTTCCAAATCGCCTTCCTGACCTGATGTGCAGCTGTATTCCCATCACAAAGGCTGCACTGCAGAGACAGGGGCCAGCCATGGCCGCTGTCACCTGGTGGATGGGTACAACTGCCCACATATGCAGCATTCTGCCAGGCGTTGTGAGCAAAGCAAAACCCACCTTTAGGGGCATTGTTTATCAGCTGGGGATGGATTCACTGCTGGGTGGAGAAGGAGAAAATTCTCCCAGTGATGGGACTAGCATTCTGCTGGACCTGGTTCTTTGTGCTGGGGTGGTGGTCTTTCTCCTGATGACAGGGTACTGGTGGGGTTAGCACAGACAGTTGCTTTCCAGTTGTCACTGTTCAGTAGCAAACTGCCGTGTCCCTGTTTTAG
Seq C2 exon
TGGTGGAAGGTCTCCAGGTTCAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002486:ENSGALT00000003917:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]