BtaINT0125523 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011588 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr22:51070447-51070789:-
Coord C1 exon
chr22:51070696-51070789
Coord A exon
chr22:51070509-51070695
Coord C2 exon
chr22:51070447-51070508
Length
187 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGC
5' ss Score
6.1
3' ss Seq
GCTCTCCACCCCACCCCCAGTGG
3' ss Score
6.52
Exon sequences
Seq C1 exon
GGCAAAGAGGAGGTGAGGGAAGAGACCTCTGAGGAGAGGCTCCGGCGGCGTGCCTACGAACGGGGCTGCCAGAGGCTCAAGAAGCGCATTGAAG
Seq A exon
GTTGGCCCCCAGCCTTGGGCACTGGGTGGGGGTGGAGGATTTGCGTGCAGGTGTACTTGGGGCACTTGGTGGAGAGCATGCTTAGGTGGGACGCAGGGATCCCTGGTGGTGGAGCCCTGATCCAAAGCTGCTCCCCCTGCCCGTCTCCGGGAGCCTGAGGGTGTCCTGCTCTCCACCCCACCCCCAG
Seq C2 exon
TGGTGGAAGAACTACAGGTCCAGATCCTGAAGCTGCTGCTGAACAATAAGGATAACAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011588:ENSBTAT00000045376:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGAGGAGGTGAGGGAAG
R:
CCCATTGTTATCCTTATTGTTCAGCA
Band lengths:
155-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]