RnoINT0127625 @ rn6
Intron Retention
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116844686-116845028:-
Coord C1 exon
chr8:116844929-116845028
Coord A exon
chr8:116844748-116844928
Coord C2 exon
chr8:116844686-116844747
Length
181 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
ATATTCCTTGCCCCATCCAGTGG
3' ss Score
5.69
Exon sequences
Seq C1 exon
GGCAGAGACGGTCAGGAAGCAAAGGAGGAGACCACGGAAGAGCGGCAGCGGAGGAGAGCTTACGAGCGTGGCTGCCAAAGACTCAAGAAACGCATTGAAG
Seq A exon
GTCAGCCCCTGCTCAGCCGTGGGTAGGGAAGGGTTTGTGTGTGTATACTTAGAGGAACAGTCGGTGGTGACCATACCTAGGGGAGGGGAGGCTTGGGGTCCCCTGGGGGTGGAGGTCTGACAAAATCGCTGCCTGCTACCATCCCTGGGAGCCTAAGGGCTATATTCCTTGCCCCATCCAG
Seq C2 exon
TGGTGGAAGAACTGCAGGTCCAGATCCTGAAGCTGCTGTTGGACAACAAAGATGACAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378:ENSRNOT00000043825:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.588 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAGACGGTCAGGAAGC
R:
CCCATTGTCATCTTTGTTGTCCA
Band lengths:
162-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]