RnoINT0131069 @ rn6
Intron Retention
Gene
ENSRNOG00000002104 | Scaf4
Description
SR-related CTD-associated factor 4 [Source:RGD Symbol;Acc:727896]
Coordinates
chr11:30407194-30410112:-
Coord C1 exon
chr11:30410051-30410112
Coord A exon
chr11:30407278-30410050
Coord C2 exon
chr11:30407194-30407277
Length
2773 bp
Sequences
Splice sites
5' ss Seq
ATGGTCAGG
5' ss Score
2.92
3' ss Seq
TTTTGTTTCTTGTTTTTAAGCTC
3' ss Score
9.33
Exon sequences
Seq C1 exon
GGTTTAGCTTGGTGGTGAAGGTGGAAGTGGAGGTGGAGGTGGAGGTGGAGGTGGTGGTAATG
Seq A exon
GTCAGGCTTTTGTTTAGTTTTGTTTTTTTAAGGTGAGCATCTCCTTAAGCAAGGCAATTGAAGTTGATGTCTGCTTTCCACAAATACACACACACAGTATTGTAGTAATTTAGGGCTGGGATGTTAACATAGCTAGCAACTTGTACCTTAGTACACTCGTATGTAACATGAAAACATGTCTACCTGACAAGGGCTCCTGGTGTTTCTCCCCAGATGATGTGTGTCAGAGCACATGGTTACCAGGGAGGCGTTTCCATGAAGGTAGGTTTGTATCTAAGGGAGCCAGTGCTCTAGAGAGCACAGAGTTTCTTTGACAAGTCAGTAAGATATTGGTAGCTATCAGCTTTAGAAAATGTTTAAAATCTCTAAATTTCACATTTTCCTAAAGCATTTTTCTCAGATTGCATCAAGTACAAATTCACAACTTGAAGAGTTAAGAAAAGTTGGTCAAGGAGAGTCAAGGTTGTTTAAAAAGAGGCTTAGGTGTCCTGGAAACCTGTGTTGCTTACTTACAGTTCTGAAGCATAAGCTAGGCATGGTAGCACACACTTTGAATCCCAGAACTGAGAGGCAGAGGCAGACTGGTCTCTGAATTCAAGACCTGCCTGGTCTACTCCTGAGTCAGGCACAGCCAGGATACACAGACCCCGTCTCTAAATAAAAAGCTTTAAAATGATTCTGCTGCTTCTCTACATGCAGAGTATGCTGTTTGCTGAGCTTTTGAGTGAAAAATTAACCCCCGAAGACATTTCTACTTACATGAAAACTTAACCAATTGGTCTTTGGAGTCACCCATGGGAAAATTCATGGGCTGTACAGGGTGGCTCAGTGGGTAAAGGTGTTTACAGGCAGCTGGATCCCTGGGATCCAGAACAGAAAGAGAAAACTGACTCCCTGGTGTCCTCCGCATGTGCACTGTGACATGCTCACATCATACAACATAGACAACTGTAATAAACAAAACCGTCATGTCTGTTATACCCTGGTAATTTCCTCAACGAGAAGACGAGGGTCTGTTTGCGTTCTGATTAGCCTTGGAGTGTTTGAAAAGGCTATATGTGCCTTTCTGGGCTTTAGGGTGTCACTTGACTCTGGTACTCTTTAGTGCAGCTCTTTCCTCTGCTGTATTGGACTTTTTTTGTATCCCTAGCTTCAGTAGGCTCTAGGTTCCCTTTTAGCACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGAAAGCAAATCTTAGAGGTGGTGAAGTCACCTTGCTACCTTATTCATCTCTTGTTAATCTTTTGCCTGGATATTGACGGTTGCTGTGTGAGAGCCTATGCTTTAATTTTTAAAATGATTATGACAGTTTCTTTTTACTTGGAGGCAGTAACATCTTGTATGCTCATTGGACTTTTTTTTTTTTTTTTTTTCCGGAGCTGGGGACCGAATCAGGGCCTTGCGCTTGCTAAGCAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCCTCATTGGACTTTAAAAGAAATGACTTGCCTACTATTGAAATCACTATGTACAATCTTGGCATTAGACAAATACTAGCTTAGGCTTCAATAAAATATACTCTTGAGCCACGCATTGACTATTCTGAAGCCCTTCGTCTAAAAATAGAGATGGAGACGATAGTAAACGGTGTTGTGTGTTTATGAGTCTATGGATTTTAAGTTGAAGTAGTTAAATTTGTTCATTGATTTACATAGCTTCACCCATCACTACAGCTTTTCTACTTTTCCATTTAGAGTCATTCTCAAGGAGAACCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAGAAAGTTCAAGCTCAAGTGTCATGTACTTTAGTTTACTTCTCCCAGCTCTGAGATTACAAGGACAAGCAACCACACACCACTTTCTATGTGTCTTCTAGGGATCAAGCTCAGTCCTGTGCCCCTGAACCATCTCCCTGGGTGTTCTTGTTTTGGGGCAGAGACTATCCTTGGCTGCTTTGGAGCTCACAGAGATCTGCCTGCCCCTGCCTCCAAGTACCAAGGGAATTAAGGGCATGGGCTGCCACACTAGCACTGACCTCCCCAGACCTTAAAAACCTGTGCTTAATCTCAGGAGTTTGTGCTTGTAACCCTTCTAGTTCTGATTATTATTGCCTTAGTTGTGTTTAGTCTTTGGAGTAGAGAATATTGTGTGTGTGGTCATGGGGTTCCCTGATTGCTAGAACGATGTACTAAACTGAGTTCTGATTCTCAGAGGTGGGCTAGGTTTTAAGAAAAGAAATTTTAGGGTTGGGGATTTAGCTCAGCGGTAGAGTGCGCAAGGCCCTGAGTTCGGTCCCCAGCTCCAAAAAAAAAAAGAAAAGAAATTTTAAATTCTCACACTAGCATCATAGATAGTTGGAACTTTACAAGGCATTTTAAATTTATTGTTAAACATTTTACATGTTTATCTGAATGAACCTTAGGGTTATGGAAGTTCTCCAACATCTCAGAAAGATTTGGAACTGAAAATCTATAGCTTTTTTTTTTTTTAATGCTTTTGCCTCTGCATTCATACATTTTTTTCTTTGCTGTGACCTTCCTAAGTGATGATGCAGACAGACTGTAGAGTTGTTAGTGACATTGGATACATAGCCGGATTGACACATCGTAGTTACAGATGTTTGCTGTTCGCTTGGCTAATAGGTAGAAACGTCTGTGTAAAACAGTGGGAATTGACCTCTGAATTGAGTTTGTGAGTTATTTTTGTTTCTTGTTTTTAAG
Seq C2 exon
CTCTTCTCACTTATGGATATGAAACCACCCATCTCTAGAGCCAAGATGATTCTTATTACTAAAGCTGCTATTAAAGCTATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002104:ENSRNOT00000002881:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000047741fB12924
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]