DreINT0131051 @ danRer10
Intron Retention
Gene
ENSDARG00000077093 | scaf4a
Description
SR-related CTD-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9003]
Coordinates
chr10:25751298-25755128:-
Coord C1 exon
chr10:25754993-25755128
Coord A exon
chr10:25751384-25754992
Coord C2 exon
chr10:25751298-25751383
Length
3609 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
GTACATCTTGTTTTCATTGCAGT
3' ss Score
-10.2
Exon sequences
Seq C1 exon
GTCTGCTGCCAGGGGCGGACATGTTGGGGCGGCCTGCTGGAGGACAGTACCACACATATTTCTGAATTTACCCGAGAAAGCGACCGCGGAGCAGAGACGGGACGCCATGGACGCCGTCAACGCGTTTAATCACGAG
Seq A exon
GTGTGTGCGTGTTCGGGCAGATAAAACGGCTGCAAAATGGCGGTTTGGTGAACACAATCGTTCAATGTGTTGCAAAGGGCCAGAGCAGATGAAGGCCTCAGTGTTTAAATTGCGTAGCTGCATGCTGTGAGCTTGGGTATAGCTGACCACAACACCCCGTCCTTTTATAAATATTAGCCTGAATCATTAGATCTGTGTATTACGATAGGTTTGACGCCATAACAGCAGGCCTGGTTATCATAATAGAGAGCGTGATCTGCTGCTGGACATTTTGCATGATAGTTTCTGCTTTCGTACGTCTGATCTAGCATGTATGAATCACTCATGTGCTGAAGATGTAACGTTATGATCAGACACGGATTAGTTCTCATGTTGTTTACAGTCACCGAATGCTATCTGTGCAGCCACGAGTTTGCAGCTTTTAGTGCATTTGAGGAAACAGCCGTAATCTGTCACAGTTTATTCCTTCAGTAACTTCGTATTGTTCGTTTATGGTCGAGATAAACAATAATGGGCTCAAACGGCTAACGTTAATTATACAAAAATGTGTCCGCCGACGATAGAGATATCAAAATTGTTTCTTAGTTAGACTTGTTTGTCAAGTTCCATGGGGAATTTGCATAAAAATGCCGTCAAATTTAGTTTTGAGCATCTATTTTTGAGAGGATGTTTTTTACTGTATCTTTAAGAAATGCAAATGAGTTCTATTCTTTCTGCCTACTGGAGTTCAACGTTATCAAAGAAAGTAAACATTGAGTTCATGTTGATATGAACTGTTATTTGGTAAAGTTTTTACTTGTTATAAAAGGCATAATTCACCCTGAAATGAAAATTTACTCACCCTCAATAGGTTTTAAACTCTTATGAGTTTCTTTCTTTTCTTCTTCTGTTGAACACAAATGATATTTAGGAAAGACAAATAATATGAATATTGATGGTTTTCAGCTTTCTTTAAAATACTGTCTTTTGTGTCCAACAGTAGAATGAAATGTAAACAGGTTTGAAACAAGTGAAGGGAGCGTAAATGATGACATTCAGTTTTGGGTGAACTGTCTCTTTAAGCAGATATCCCCCTATTAGTCAGCTAAATAATCAGTCATGGCCTTAACACAAACTCAATCACTGTGCTGTTATGTTAAAAACTTATCTGAAATTCATAAATTGATTACTGCAGCTCCTGGCCCTGAGCTGTAGTCTTCTATTGTTTTAGTTGACGTATGTACAGTCTATACTGTAGCGTCTAGGCTGAACATGTAAAATAAAGAGCCACAACATAATAATTTGCCTTTGCCTGTTTTTATTTTATTTTTTTTATTTTTTTATGTACACCAATATCTGAGCTAAACATGACTTGATTCTTTAAAGGGTTTATTTGTTTACCCAAATATGAATATTCTATCAGTGCTTACTCTTCTTCCATTTGTCACAAACCTGTTTGAGTTTGTGTTTTTCTGTTGAACACAAAAGAAAAATGTTGGAAACTATTAGCCATTGACTTCCATAGTATTTGTTTTTCCTACCGTGGATGTCAGTGGGAATTAGTTTCCAACATTCTTCGAAATAACTTCTTGATTTGTGATCAACAGAAAAAAGAATTTCCTAAAGGTCTGGCATCACTTGAGGGTGAGTAAATGGTGAATACAATTATATTTTGGGGTGAACTATCTTAAAAGTTTTGCTCTTTAATGTAAACAGACACATACTTATCAGAAAACATGAACTTTGAAGCGCTTGCATGTATTATACAAAATGTACATTTATATTAAGGTGCAAAATAAGAACGCTTGAGGGGGTGTATGTTTCTGAACACGATGTTTAAATGAATTCATTAAATGAAAACTCTCATTATAAATCCCTATGAGAAACTTTACAGGGAACAGAGCAAATTATTTTAGGTTTTGACAGCGTACTTGCAAACCGATTTTTGTTTATGTGGTTGTCTTTGTCCACAAAAAATAGTTTTTTGTAGTTTATGCAGTGATGATATTGTAAAGTTTTCCAAAAAAAAGCATTTTTAAATCGAGCTTCAAAAATCTGCATTTTCAGGTCCCTGTTGAGGTGCACCATTGTTAATAATAAGAATAATCATTCTTTACATTTATATAGCGCTTTTCTGGACACTCTAAGCGCTTTACACATTTTTGGAGGGAATTTCCTCATCCACCACCAGTGTGCAGCATCCACCTGGATGACTTGACGGCATTAATATTGCACCACACCGCACACCTGCTGATTGGTGGAGAGGAGACGGTGTGATGAAGCCCATTGTGATATGGGGATGGTTATGAGGCCATGATGGACAGAGGCCAGGATGCCAGTGTTAAACCCCTACTCTCTCTTTTTTTTCTTTTTTCTTTTTCAAGACATTCTAAAGTTTTAGCGACATCTTATCCAAAAGACAGCTCTCACTGAGCAGTATAGAGTCTGCATCAATGTACTGGGGCATTAGGACCCGAACAGACCTCAGGTTGAGCACCCCCTGCTGGTCTCACTAACACCACCTCTGTCAGCAACCTAGCTTTCCCATGTGGTCTCCCATCCGGGTGCTGACTGTGCACAGCCCTGCTTAGCTCTAGTGGGCGACCATGTGAGTTGCAGACAGCCAAAACTCTTTCAGGGTTTTTGTTGAAAACAAACTAAACACACGTTTGTTCAGCAACCATGTTTGAAAAGGTATTTCTTCCAAATGGATTTTAATGGAAGTTAATGTTGAAGATATATGCAACGTGAGGAAAGTCACAACATTACAGTCTTTGTTTTAAGAAAAAGGAAGTTTTTTTTACAGGGTTGTTCAGTTTGCTTCTCTGATTTGCAGATTTTCTTTCCTGGCAAAACCATGAATATTTTTCTCATTAGGAATTTTGCATTTCAACAGTTATTAAACTATGATGTAGTAATGCCGATTATTAACTTAATCAAAAAGCAAATAACACAGATTAACCACCCCATTGCTCACAGTAGATCTGTCTTTAATGCTGTTATCATTATAAGTTTTGTTTCTGTGAAGAAAATGATTGAATTTGACCTTGAGGGAACCAGACTGTTGCATTTCATTAACAAAACAAATCACAATGTTTATGTTTCCAGGAAAATCATCAGCATATGATAAACGGTTATTACAGTGGTCTCTGCATATTGAAGTAGAAAACGAGAAAGCATTTTAACAACAAGCTTTAGAATACCTCCTTTCTACTAGAAATCCAATAAAATCAACTTCAAGTGTGAATGTGGCATTCAATTTCGATCCAGCATGCTATGGTGCATCTGTATTTGTAAACAGTGCTATAAATTATAAAAGGCCTTCTGTTATTTTATAAAGTGTTTCTGTAAGCTAGATTTCACAGAATATGCCTTACAAAATCATAAATTCATTGGAAATAAAATGCTGCTTTAATGTGTACTACTATATCTTTTGATATATTTGTAGCACAGAATAAGTATAATACTTTAGTATCTATAAAACAAAACACATCATCCTTTGGTGTAAAATATTTTGAAGGCAGTGTTAAGTGTGATTATTCAGTAATGATGTTTGTATGCTTCCGGTGGGACCTCAAACCTCATTAGCACCTTATGCATTAACACTACTGTACATCTTGTTTTCATTGC
Seq C2 exon
AGTTGTTCTCCTTGATGGACACCAAGCCCCCCATCTCGAGGGCCAAGATGATCTCTATCACCAAATCTGCCATAAAAGCTATCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077093:ENSDART00000140483:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]