RnoINT0131906 @ rn6
Intron Retention
Gene
ENSRNOG00000010617 | Scube1
Description
signal peptide, CUB domain and EGF like domain containing 1 [Source:RGD Symbol;Acc:1309015]
Coordinates
chr7:124549931-124555249:-
Coord C1 exon
chr7:124555124-124555249
Coord A exon
chr7:124550048-124555123
Coord C2 exon
chr7:124549931-124550047
Length
5076 bp
Sequences
Splice sites
5' ss Seq
CACGTAGGT
5' ss Score
6.85
3' ss Seq
TGTACCTTGGGACTAACTAGTAA
3' ss Score
0.23
Exon sequences
Seq C1 exon
AGGGTATGAACTGCATGAACAAAGACCATGGCTGTGCCCACATCTGCCGGGAGACGCCCAAAGGTGGGGTAGCCTGTGACTGCAGGCCCGGCTTTGACCTTGCCCAAAACCAGAAGGACTGCACAC
Seq A exon
GTAGGTAGATGGAGGCAAATGGGTCAGATACTCCCACTTGTCTCCTACCATTGCTCTGTAGTGGTGGGTGCTGGGCATTGGTCAGGGAGGGATCTCAGCACCCTGGGGTAGAGGTTGGGGTCAGCTGAGGGGCTTGGGGAAGCTGGAGGGATGGGTCATGACCTCCCAGTTTGGAGTTTTCTATTCTTGGTATGACACCATCAACACAGCCCTAGGCACTGGCTTGGACCATGTATAGAGCCCTGAGGTCAAACTCTCCTGTGGGGGAAGAGGGCCATGACTCAGAATCTTTAAAGCCCCACTTTGTCTATCAGCCTGAAAAGCCTTAGGTGACAGAAGAGTATAAAGAAGTATAAAGAGTATAAAGGAGAGTGGATGACAGGGGGTGGATGAGAGGAAGTGGACCCAGTGCTGACAGTTTTCCAGGTAAAAAGGTCAGAACCCAAGAAGTTCAAGAAGAACCCTTGCCTGGGTTCTTTCCATTCCCAGCACCGCATAAGCCAGGCATGGTAGTGCATACCTGTAACTCCAGCACTTGGAAGGTAGAGACAGGAAGGGAATCCAATGTCACCCTCAGCTATCTAAAGAGTTTGACACCAGCCTGTGCTATATGAGACCCTGTCTCAAACACAATACATACGTACATGCATGCATACATGCATGCATACATGCATGCACACATGCACACCTACATATACATACATACATACATATATATACACACATACACATACATACACACATACACATACACACATATACACACATACATACACACATACAAACATACATGTATGCATGCATGCATATATACACACATACACACATATACATACATACATATACACACATACACATACATACACACATACACATACACACATATACACACATATACATACATACACACATACAAACATACCTGTATGCATGAATACATACATACATACACACATACATATACACACATACATACATATATACACACATACATACATATATACACACATACATACATACATATACACACACATACACACACATACACATATACACACATACATAAACATAAATACATATACATACACATATACATACATGCATGCATGCATAAATACATACATACATATACACACATACATAGCAGAAATCAGGGACCTCCACAGGGCTGAGCACAACCATGAGCCCCATAGCTGAAGAAAGCAGCAGGCCAGAGGGACCTTTTCAAGGCCTGCTTGCCTGCCTGGAGGAGACCTGTCCTGGGACTCAACATAGTATGGCCTCTTTTTATTGGGGGTTTTATGGGATAGGGTTTCACTGTATCCCAGAATTTGCGACGTAGACCAGGCTGGTCAGGCAGAGATCCATCTGCTTCTGCCTCCAGAGTGCCAGGATTAAAGGCGTGCTCCACCACTCCCATCCCTATCCAACCTCTTACCATGGGCATCCAGCGCTTGAGTAGGAATGGAACTAGGAAAGGAAACAGGAGCTTAAGACCTCCAGAGGCTTCCAGAGCACCGGATGCAACGCACCCTGCCAACAGCTTAGTGGGAAGGCGTTGGGCTGCGGGCTCAGCTAACTGGCCATGGGGATACCTCAGCGGAACCAGGTTTCATCAGCCTCGTGCTTGGATACAGAAACAGGCCAGAGAAGGCTCTTCTGACTCTTGAGGATGTGCTCCCGGCCTCCTGGGCTTCAGCTTCTGAGCTGACTGACGCTGCCGCCATAAAGACCACGGCTTTCCCTTATTCCTCTAGTCTGGGTAGGAGACAGCTGGACCACCATCCCCAGCCACTGTGACTCTCCCAGCTCACCTTCCACAAACAGTTGCCAAGGCCCTGGGGACCCATGAGCGCCTGCTGTTCTCCCTGTCCCCTGGGGCTCATGCTCCATCCTCCCATGCTACCTATGCAGCTCCCAAAATGAAGTCACTTTCATCTCCAGCGTTTCGTGAACTTTTCCTTCAGAGATGTTAACGAGTGCCCGCTCGCCCTAGATACTGATAGACAGGAGTACGATTCCGCCCAAGTCCAGCTTGGGGAGCCAATGAGTTTAGTGGGCTTATTTACAAAGCATGGGTGACCTCAAAGCAGCCACACAGCCAGAAGGTCTCGTGTCAGCATGGATGATGGCTTCCCCAAAGCCACAGACAGGAGCCCCACCCCCAACCTCCACCCCTCAGCCCTGCACAATCTATGCACTCTATCACCACCTCAGACCGCATGCGGCTGGGGCAGAATCGCAAACATCTGTTCTGATGAAGAAGATAATTGCTCTGGTACTTCAAGGATAACATCTGCCTACGGTCAGGATATGGGCCAGCCTTTCTCATTACGCCCAGCTCTTTCCCAAGGAACAGCAGAGACATGCACGTTGGCTGTCACCAAGGCAGAACAAAGATGGCCTGGACCCTGGCCTGTCCCCACAGATGGAGACTTCCAACTTCAAAGGAAACACAAGCTATCTGACCACTTTCAGAGCAGATGGAGCTGACAATGGCTCTCCTGGTCCTCGTGCTAAGTGAGGGCAGAGGCAGGCACAGGCCCCAGACAGCACAGCCTCTAAAGACTTGCTCCATGCCAACACTAGAAAGAGGGCGCTAGTGAGCTCACTGGACCAGTTTGCCACTTTAATCCATCTAAGACAAATGCCCCACAAGAAGGCTTACCCAAAAGGCTCCTCTGGGTATCTGGCTTGGCTGGAAAGACTGGGGAGAAGCCAGAGTCTATGGAAAGCGAAGACCTCTACCCTAGTCACCACAGCGTCAGAAAAGGTCTAAGCCCAGCCTAGAACATGTCCTGGGCCATAGGTTCCCAAGCCCCCACCCTTCCTGATTAGGTATAGAAAGCCTAATTCTAAGGAGTTGGGACAAGCCCTATGGCTTCCCTGGAAGATGGGACCCAGGGGGTCTGGTTTTGGTCCCTTCTGAGTGTGAGGCATGGTTAAAGATGACTTGGGGAAAAAAAACAAAACTGGGTGGTGTTGGTGTGGTGGTACATATCTTTAATCCCAGCACTCAGAAGGCAGAGGCAGGTGGATTTCAGTGAGTTTCAGGCCAGCCTGGTCTACAGAGCAAGTTCCAGAACAGCCAGGTGTACACAGAGAAACACTGTCTTGAAAAAAAAATAACACTGTCTTGGAAGAGCAAATCCCCAGATCCCATGTAAATCTAGATACATAGTACTGTATGCTTGCTGTCCCAGTGTTTCTGTAGTGAGATGAGAGGAGGATACAGGAGAGTGCCTGGGAGCCCACAGGTCAGTTAGCATGATATACAGTGGTAAACAAGAAGAGACCCTTCCTCAAACAAGGCAGATGATGATGATCAGCTCATAGGACCCAGAAGACCTGCGTGAGCCCCAAGCTCACTTGTATTTCAAGAACCTTGGACTCTAGAGTTGGTCAGGAGCCCAGGCTGGAGCCAGAAAGCTCTATACTAGTAGAGAAAGACTAGGGCTCCATACCCCAACCCTTAACCCTCCAGAGTCAAGGGTCCTTTTCAGAGATGAGGACATTCCTTTACCCCTTGGTCTTCCCAGAGCCCAGCATGCAGAGCCAGAGAACTGTCTGTGGTACTCTGGATGCCTTGTTCCAAGATCCCCCTGTGACCACTATGAAGAGAATTCTCAGTTAAAAAAAAAAAAACAAAAACAAAACCCCAAAGCATAATGACCATCCTAAGATTGTCCCATCCCCTGAGACCTAAGCAGGTCCTGCTCCTGAGCCCTGGGCTTTTGTTCTCATGAGGGAACGCTGGGCTGGGGAAACTTGGGGCCTGTCACCACCATTCCTAAGTGTAGAAAGGACAGACTTCATGGAGGAGATCCTGTGGGCCATCTAACTTCCATGGAAGTGGGGTCAAGAGGAGGACACCACCGAGAGGCTCTGGCTGCTGAAGACTGTGTTGAGAGGCCAGATAGATACCCTGTCCAGCCATTTAAATTCTGTCTCTACCTGCTATGGAGACATCATTTGTCCAAGGTCCAGGGGCCAACGGTGACAAGTGAGCCCAGAGGGTCATGATAATCCCTTCCTAAGGAGAAACATGTGCGAAACGTGACTGCAGAGGTCCATTCTGCCGTGGGTGGAAGCCATGATGTCACCTCCAGTGACTTCTCCCCTTACAGCCATCTGAACGGACCTACTTAGTAGGCACGACTAACGAAGCTCTCAGATCTGGAATTCGATGCTCCTCTAATCAGGCCTGGCCTCAGACTGACTTCATAAGTGGATAATGCATGCAGACAGAGAATAGACATCCACTCAGGGTCTCTATGAGACATGATGTCCTGACACTTAGGTGGCAGCCATCTTGGCCACCTCGAGTAATAAAGAGTCTCCAAGAGCCCCTGGGAGAGATCTGACTTAGATCCTTGTCCTCATCTGGTGGTCTCTCCTCCCCCTGCCCCAGACAGTGGCAGTCGTCATTTAAATAAACTTGAACTTATCATTTCCCTACTTCAGACTGGCTCCTGGCCTTTTCTGGGTGCAGGCTGCCAGGGAGCATCTTGGATGAAGGGCCCTAGGTTGTCCGGCTACAGACATCACCAACCACATAATGTAGGTCGTTCCCAGCATACACCCCAGATGACATAAATTTGCTTAAGCTCTGCCTATCTCGGCATTGCTGAGTTCCAGGGTCAGGGCTGTGAGGGAGAGTGGATAGATAGTAAGAACTACGAAAATGAATATCACTTTGAACCACGGCTGTCATCTCCCCTACAACTGATCCTGTATGTCCCAATGTTAACAGGCATTTGCCCCAACAGGACCAATGTGGTTAAAGTGTCTTGCATGTGCATCTAGCCTCTCCCTTTCTCCCATGTGAGGCCCCAAGTCTACTCCTCATTCACCTCCAGATACTAGCATTCATTCCTACTGATACCCTGAAGGGCCTCAGGGACAGAGATGAGTCTCCACTACCATCTGTCTTCGAAATGCCGTTCCCTCGCCACCTCAAACTTCTACTTCCTTACCCCCACGCCCCCCCCCCAAAAAAAATGACCAGTGCCTGTAAACTAACAATTTCTGTTGTTGTTCTGTTTATACACACGTGTGTACCTTGGGACTAACTAG
Seq C2 exon
TAACCTGTAACTATGGAAACGGAGGCTGTCAGCACAGCTGCGAGGACACGGACACGGGCCCCATGTGTGGCTGCCACCAGAAGTACGCCCTACACGCCGATGGTCGGACGTGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010617:ENSRNOT00000017727:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.0)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]