RnoINT0132323 @ rn6
Intron Retention
Gene
ENSRNOG00000005229 | Sec16b
Description
SEC16 homolog B, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:621658]
Coordinates
chr13:75213923-75215046:+
Coord C1 exon
chr13:75213923-75214002
Coord A exon
chr13:75214003-75214947
Coord C2 exon
chr13:75214948-75215046
Length
945 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTGTTGTTTGCATCCACAGGGC
3' ss Score
10.17
Exon sequences
Seq C1 exon
GTGGGAATAGTCTCCAGGGATCCTCAAACAGCAGTGGAATGGCTGAAGGCGTGGGGATTGGAGGGTTCTCGGGGCCACAG
Seq A exon
GTGAGCAGGCTGTGGGCGTGGGGCTGGGACTCCAGACGATACCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGAGGATGTCTTCAGTGGGCTGGAGAAGCATCCTTGCAAAGGATGGCTTCAGGATACGGAAAAAGCTTCTGTATGACTTGGCTCCAGTGGCCTACAGAGTACCTCAGTCTGGAGGGCCTAGCCAATGGAAGGGTGGTTTCTCACAGGTCTGGGGCATAAAAGTGCATGGTCACAGTGCTGGCTGATCTGATTTCTTCTGAGGGTTTTCTCTTGGGTTTGTAGCTGTCTGCCTTCCCCCGTGTCTTCATCATCCGGTCTTCCGTCTGTATGCGTCTGGGTTAACTCCTCCTTTTGTAATGGTATCATACATGTTGTGCAGGGCCCTGTAGAGCCTCTTTGAGGATTATCTTTCGTGCTGAGATACTGGGGCTTTATCAGATGCATTCTGGAGAATCACTCCAGCCTGTATAGCTTAGATGGAGTCCAGGGAAGGGCCTCTTCTTCAGTCTTAGTAGGCAGTGGAGTTCACTCGTCANCNGGTGCACTTGGCTGGGACTATCATAAATTCTTCACAAATTGTCTATATAGCTAGGGATATCCTGACTATTGCTAGGGAAATGTTTCCATTTCTTCAAGCCTGGCTGGAGTGCTCTTGTAGCATCTGAGGCCTTCTGAAGAGTTTAATAGTGATTTTTATGATCTGGTATAATTTCTTGTGACTTTTCTTCCTACTTTCTTTGGGTGTAAGAACTTTTGCTTCTGTTTAGCATCCCTGGTCCCGGCATTGGCTATGCCTGCCTGAGGTTGAGAAGAAGCCCATTTGTTGGCTAATAGCGATCCTTGTGGCAGGGTTTAGCATACCAGGAGGTGGCCAGGGGTCAGATTCTCTGTTGTTTGCATCCACAG
Seq C2 exon
GGCGTTTCTTCTGAGTTCTACTCCCAGCCTGGTGCCCTGCCTCCTCCACCTACCTTGCAAGGTGCTGTTCCTCTCTACAATCCATCTCAGGTCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005229:ENSRNOT00000007321:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]