RnoINT0138562 @ rn6
Intron Retention
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11878805-11881930:-
Coord C1 exon
chr15:11881742-11881930
Coord A exon
chr15:11879174-11881741
Coord C2 exon
chr15:11878805-11879173
Length
2568 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
ACTTATTTGTTTTATCTTAGGGG
3' ss Score
8.51
Exon sequences
Seq C1 exon
ATATGGTGTTAGACAACATGATAGCGTCTGGCCAGCTAGATGACTCCATAAGGGAGAATGTTCGAGAAGCTCTTCTGAAGAGACATCATCATCAAAATGAGAAAAGGTTTACAAGTCGGATTCCCCTCGTTCGATCCTTTGCAGATATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAAAGGAATG
Seq A exon
GTGAGATCAGTTGTGGTGTCCAGTTTTGCTAACACTTCTCTATGGCATTCCAGCCTGTTACACTTAATATGTGTTGCAAGAAAAGTGGTATTTCCACACTGTTATTGTTTTTAATCCAAAATTATCATTTCTTAAGTGTTTCTTTTGTTTGTTTTTGTTTCTTTGAGACAGACTCATTATCTGACATGGGCTGGCCTGAAACTGTGTATCTTATGTTGGCCTTGAATTTGAGTTTACTTCCTTGGTCTCCTAGTTGCTAGAATTATAGGCTCCTACAAACAAGACCAGTGTGAGAAAGAAAGCCCCTGGATGAGAAGAAAGCATTCACTGTCACTAAAATGACATACACTTTTCTTAAGTAATCTATTAATACAATTTCTATCCCTTACCCTAAATCACATTTGCTTTTTTTTATTTAATTTTGATTTGAGGTTTCTTGTGCAGTTATTTAAAAGGCATAAACTATGATCTGTAATTTTAATGTTTTTAATTCTAAATACTGAGTTTGAACTTTATGCCTGTATCAGATTTTTTTCTTGATGATTTTTTTCCTCCTTAATATGCTAAAAGTACTAATCATAAACAAGTGTTTTAAGAAGTGGTTTCAGATATTTATGTGCTTTGTGGAAAGTTTTCGTGATAGGCCTGTCTTATACAAATGGTATTTTTCAGTCCATTGAGAATGGGTCAAACCCAGAGGTTAGACTCAGTTCTGCTTTCCCCTTGGAGGAAGATAGCAGGTTATGTAGGACTAGGAGATAGTGTTTTTGATTTTTAAACTTTACTTTTACATTGTTTGTGTATATGTTTTGCCTGCAAATATGTATGTGTGCATGGGAATGAGAAATTGGAAGAGGGCCATGGATCCCCTGGAACTGGAGCTAAGGATGGTTGTGACTTACCACATAGGTGCTGGAGACGAACCCAGTTCCATTGGAAGAGCGACGAGTCTTAACTGATGAGCCACCTCTCCATTCCTCCTGCACTTTAGCCAGCCAGCTGTCTGTTCGTAGAACTGATTCACATTGAGCATTTGCCTTGCTTTATTTTTTTCTAAAGTAGGAGTACGGCAGTCTGGTTCTCTCTTGGCTCTTAAAATGGAACTGGGTAATAAAAACTAGAAAGCCCAGATGCAGATGCTTCTGAGAGTCCTTACTGCTTCTAACTGCTGTCATTACAGCAGACCAAGTGGGGCCTGGGACACAGTAGCTTTCTCCTCTTTCTGTCCCTGAATGGCTGTTACATAGTTGTCTAAGTTATCAGCCATATGCATAAGGCCTTAACATGTCAGGGGTTGACGTCAGCCATTGTTTGTAGCTCAATGTAACATTTAATTTTGTCATTAAAGAGTCTTAATTTTTTTAAAATTATGACGTCGTACATTTAAGTAAACCTATGACGTAGGTTTAATTTAGAAAGAAGTTATACATGGGATAGTTCTGGTTTCCTTCTTTTATTGCGTTCTTCACTTTGCTGAAGTGCCTTCATTTACCTGAAGGACTCTAATAAACTTTTATTCCTTTATGCAGTCTTTTCTCTTTATTCTCTCTGGGTTTAATTTTTTTCATTATAACACAATAACTGTTTCTGAATGCAATGTTATGTTAATTTCATTGCATTATAATTATAACGTAAACACCTTTTTTGCATGTATCTTAAAAACTAAATATTAGTTATTTATGTATTAACAGTTGTCTCCATTAACTTATTTTAGTTACCAAACAAATAATGGGTTTATTACACTTATCTTTATTATTTTTGACTCTTCTGACCGTGTAGCTTTGATTATGTAGGTTTAAGAGATTGTTTCATTTCTTATGCAGCTACTATTTTATTTTAAAAAGCTACAGGAGAAAGAGTGATTCTCTTTTATGCCACACTTGCAAGTAGTACCAGGTGTTTTAAGTATAAACATTCCTATGCTTTGGAAATAAATTCAGACTTATTTCTTATTGCTCTTGCTAAATGTTTTTAGTTAGCTAACTCATCGATTGTGTATACTTGTGTATAACTGGATGTACTATGGTAGAAGCAAGACGGTGTGCTTTGGAATACTGACTTAAAACTTGGTGTCCTAATTCTCTGTCTCTCTCACTTTTGTTTTAAAAAAAAAAGACAGAGCCTCACTGTGTAATCCGGGCTGACTTGAAATTTGTTTTATAAAATTAGCCTTGAACTAAGAGTTTCACCACAACTGGGTTTAATTCTCTTAAAAATAATTCCTATGATTTGTTGTTCATTTTTAAACTTTACTTAAGAGCACTGGCCAGTCCCTGTCACAGACAATACCAGTTTTAAGTTATTTACTAGGTAATGCTAATGTAGGCTCTTTGAGAGAGAATGATCTATAGATATTGGGACAACTTAAGAAGAATATGTTTTAAAATACCCATTCAGCCAGGGAAGTGATTACAGTTTAACAGCTTTTCAGTGATGTTACAAGTAACCATCTGACTGATCTGCTAACCTCACAGAGGAATTTGAAGCTTGTAATTTGTGGTTTGAGTTTTGTGTTCTCTGTTGCTTAATGCAATGAGCATCATTTTTTACTTATTTGTTTTATCTTAG
Seq C2 exon
GGGAAGGCCTGTCAGCCTCCCGCCATTCTTTGCGAACAGGTCTGTCTGCCTCAAACCTTTCCTTGAGAGGAGAATCGCCTTTATCCCTTCTTCTCAGTCATCTTCTTCCTTCTTCAAGAGCTGGCACCCCTGCAGGCTCAAGGTGTACCACCCCAGTACCCACCCCCCAGAACAGTCCTCCTTCCAGCCCCAGCTTAAGTCGCCTGACCTCCAGAAGTTCCCAACAGACTCAGCCTCAGGCCCCAGAAGTACTGGTGTCACCTGACAGGGATGATATTCCCAGAGTAGTAATTCATCCGCCTGAGGAAGACATAGAAGCACTGAAAGGCCAAGAGCAGAAGAATGAGGAAAATACTGACTTCACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957:ENSRNOT00000008759:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=NA C2=0.887
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(16.1=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(31.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]