RnoALTD0028157-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11874562-11881930:-
Coord C1 exon
chr15:11881781-11881930
Coord A exon
chr15:11881742-11881780
Coord C2 exon
chr15:11874562-11874677
Length
39 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TGTTTTTTTTTTAAATACAGGGA
3' ss Score
7.4
Exon sequences
Seq C1 exon
ATATGGTGTTAGACAACATGATAGCGTCTGGCCAGCTAGATGACTCCATAAGGGAGAATGTTCGAGAAGCTCTTCTGAAGAGACATCATCATCAAAATGAGAAAAGGTTTACAAGTCGGATTCCCCTCGTTCGATCCTTTGCAGATATAG
Seq A exon
GCAAGAAACATTCTGACCCTCACTTGCTTGAAAGGAATG
Seq C2 exon
GGATTTTGGCTTCTCCACAGTCTGCTCCTGGAAACCTGGACAGTAGTAAAAGTGGTGAAGTGAAAGGTAACGGAAGTGGAGGAAGCAGAGAAAATAGTACTGTTGACTTTAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957-10-10,11-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=NA C2=0.915
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(16.1=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(14.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTCGGATTCCCCTCGTTC
R:
GCTTCCTCCACTTCCGTTACC
Band lengths:
125-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]