DreALTD0018971-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42821834-42829079:-
Coord C1 exon
chr16:42828930-42829079
Coord A exon
chr16:42828891-42828929
Coord C2 exon
chr16:42821834-42821949
Length
39 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TTTTTTTCTCACCCCAACAGGTC
3' ss Score
12.16
Exon sequences
Seq C1 exon
ACATGGTATTAGACAACATGGTGGCATCAGAGCAGCTGGATGAGAGTGTAAGAGAAAAGGTACGAGACGCTGTGCTGAAAAGACACCATCACCAGAACGAGAAGAAGCTCAGCAATCGCATCCCGCTCGTGCGCTCCTTCGCCGACATAG
Seq A exon
GCAAGAAACATTCAGACCCGCACTTGCTTGAGAGGAATG
Seq C2 exon
GTCTTCTTGCGTCGCCCCAGTCGGCCCCGGGCATCCTGGAGAACAGTAAGTCCAGTGAAAGCCGAATAAATGGCACCGGTGGCAGCAGGGAAAATAGCACAGTGGACTTCAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952-8-9,9-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=NA C2=0.754
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(23.1=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCTCAGCAATCGCATCC
R:
CCGGTGCCATTTATTCGGCTT
Band lengths:
127-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]