GgaALTD0004574-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39046951-39054347:-
Coord C1 exon
chr2:39054198-39054347
Coord A exon
chr2:39054159-39054197
Coord C2 exon
chr2:39046951-39047066
Length
39 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TCTTCTTTATTTGAATTTAGGGC
3' ss Score
8.37
Exon sequences
Seq C1 exon
ATATGGTCTTGGACAACATGATTGCTTCTGGCCAACTGGATGAATCGATAAGGGAGAATGTGAGAGTGGCACTTCTAAAAAGGCACCATCATCAAAATGAGAAAAAATTCAGCAATCGGATTCCCTTGGTTCGGTCTTTCGCAGATATAG
Seq A exon
GCAAGAAACATTCTGACCCTCACTTGCTTGAACGAAATG
Seq C2 exon
GGCTGTTAGCATCTCCTCAGTCAGCACCTGGAAATTTGGACAATGGGAAGAGTGGAGATGTTAAAGGTACTGGGACAGGTGGAAGCAGAGAAAACAGCACTGTTGATTTTAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-18-17,19-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.785
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(23.5=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAATCGGATTCCCTTGGT
R:
CTTCCACCTGTCCCAGTACCT
Band lengths:
126-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]