GgaEX0017175 @ galGal4
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39046951-39054347:-
Coord C1 exon
chr2:39054159-39054347
Coord A exon
chr2:39051260-39051601
Coord C2 exon
chr2:39046951-39047066
Length
342 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTGTTTTATCTCAGGGG
3' ss Score
8.28
5' ss Seq
CAGGCAACT
5' ss Score
0.87
Exon sequences
Seq C1 exon
ATATGGTCTTGGACAACATGATTGCTTCTGGCCAACTGGATGAATCGATAAGGGAGAATGTGAGAGTGGCACTTCTAAAAAGGCACCATCATCAAAATGAGAAAAAATTCAGCAATCGGATTCCCTTGGTTCGGTCTTTCGCAGATATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAACGAAATG
Seq A exon
GGGAAGGCCTTTCAGCCTCCCGCCACTCTTTGCGAAGAGGTCTCTCTGCCTCAAATATTTCCCTGAGAGGAGAAAACCGTTTGTCAGTTCTTCTCAATTACCTTCTTCCCTCTTCAAGAGCTGGAACCCCGGCAACCTCAAGGTGTACAACCCCTGTAACTACCCCTCAAAACACACCACCCTCCAGTCCTACCTGCAGCCACCCGCCAACCACAATTGCCCAACCAAGTCCACTTCAGGGCAAGGATATTCCTTCAGTAATTATCCACCCACCTGAGGAGGACTTAGAGGTGCAGGAAAGCCAGGAAGAGAAGACAGAGGAGAATGTTGGCAAAACACCAG
Seq C2 exon
GGCTGTTAGCATCTCCTCAGTCAGCACCTGGAAATTTGGACAATGGGAAGAGTGGAGATGTTAAAGGTACTGGGACAGGTGGAAGCAGAGAAAACAGCACTGTTGATTTTAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405_MULTIEX2-5/5=4-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.087 A=0.800 C2=0.785
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(23.5=100)
A:
PF075658=Band_3_cyto=FE(29.8=100)
C2:
PF075658=Band_3_cyto=FE(14.2=100)
Main Inclusion Isoform:
ENSGALT00000018603fB2014
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTTGGACAACATGATTGCT
R:
AGTGCTGTTTTCTCTGCTTCCA
Band lengths:
287-629
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]