BtaEX0033356 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018227 | SLC4A7
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 7 (SLC4A7), mRNA. [Source:RefSeq mRNA;Acc:NM_001098926]
Coordinates
chr22:1809144-1817193:-
Coord C1 exon
chr22:1817005-1817193
Coord A exon
chr22:1813592-1813960
Coord C2 exon
chr22:1809144-1809259
Length
369 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTGTTTTACCTCAGGGG
3' ss Score
7.83
5' ss Seq
CAGGCAACT
5' ss Score
0.87
Exon sequences
Seq C1 exon
ATATGGTACTGGACAACATGATCGCCTCTGGCCAGTTGGACGAGTCCATCAGAGAGAATGTCAGAGAAGCCCTTCTAAAGAGGCACCACCATCAGAATGAGAAGAGGTTCACCAGCCGGATCCCCCTAGTTCGTTCTTTTGCAGACATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAAAGGAACG
Seq A exon
GGGAAGGCCTCTCAGCCTCCCGCCACTCTTTGCGAACAGGTCTGTCTGCCTCAAACCTTTCCTTGAGAGGAGAATCACCTTTGTCTCTTCTTGTCAGTCATCTTCTTCCTTCTTCGAGAGCCGGGACCCCTGCGGGCTCGAGGTGCACAAGCCCCGCACCCACCCCTCAGAGCAGCCCTCCTTCCAGCCCTAGCCTCAGCCGCCTTCACGCCAGAGCTTCCCGGCAGAGGCAGCCGCAGGCCCCAGAGCTGCTGGTGTCGCCTGCCAGTGCCGGCGTTCCCACAGTAGTAATCCATCCGCCCGAGGAAGACTTAGAAGCGCTGCAAGGCCAGGAGCAGAAGACTGAGGAGAATGTTGACGTAACTGCAG
Seq C2 exon
GTATTTTGGCCTCTCCACAGTCTGCACCTGGAAACTTGGACAATAGTAAAAGTGGAGAAATGAAAGGTAATGGAAGTGGAGGAAGCAGAGAAAATAGTACTGTTGACTTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018227_CASSETTE6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.879 C2=0.897
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(23.5=100)
A:
PF075658=Band_3_cyto=FE(31.5=100)
C2:
PF075658=Band_3_cyto=FE(14.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTACTGGACAACATGATCGC
R:
CTTGCTGAAGTCAACAGTACTATTT
Band lengths:
302-671
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development