BtaINT0136160 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018227 | SLC4A7
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 7 (SLC4A7), mRNA. [Source:RefSeq mRNA;Acc:NM_001098926]
Coordinates
chr22:1809144-1813960:-
Coord C1 exon
chr22:1813592-1813960
Coord A exon
chr22:1809260-1813591
Coord C2 exon
chr22:1809144-1809259
Length
4332 bp
Sequences
Splice sites
5' ss Seq
CAGGCAACT
5' ss Score
0.87
3' ss Seq
TTGTTTGTTCTTAAATACAGGTA
3' ss Score
8.46
Exon sequences
Seq C1 exon
GGGAAGGCCTCTCAGCCTCCCGCCACTCTTTGCGAACAGGTCTGTCTGCCTCAAACCTTTCCTTGAGAGGAGAATCACCTTTGTCTCTTCTTGTCAGTCATCTTCTTCCTTCTTCGAGAGCCGGGACCCCTGCGGGCTCGAGGTGCACAAGCCCCGCACCCACCCCTCAGAGCAGCCCTCCTTCCAGCCCTAGCCTCAGCCGCCTTCACGCCAGAGCTTCCCGGCAGAGGCAGCCGCAGGCCCCAGAGCTGCTGGTGTCGCCTGCCAGTGCCGGCGTTCCCACAGTAGTAATCCATCCGCCCGAGGAAGACTTAGAAGCGCTGCAAGGCCAGGAGCAGAAGACTGAGGAGAATGTTGACGTAACTGCAG
Seq A exon
GCAACTATCCAAAGTCCTCACGTGTGGTGCTTTCTGCCTCCGGACCACTTGCACTTGGAATGCCTCTCAGCACATAGCTTTATCAGCATTATGTAGATGATGCTTACAATTTATTTTGACTTCTGCATGTTTTTTTTTTCTTTATAGTGTATTATAGAGAAGGATAGAATTATTTAAAAATTTTAAGTTTTACAATGATCTCAAAGGAGCTTACACATAATTTAAGCCCTTTGAAAATTTTTTACTGAGGTTTTACAGGTCAATACATTTGAATGGCTCAGACAAATGTAGACATTTTTACAAGTCATCTTTTAATTTGCCATGATTAAAAAAAAATGGTGGCTCTTCTTGTGCATTTCATTCCATCAAGTGAATGAACACATGCTTTACATAAAGTATAATGAAAAGCCTTTTATCTACTGTTTGGTGCTTTTGTGTAAGGAATGCAATATGTTTTCACCTTCCTGATAAAGGTAGAATGAATGTTCTTTTTCTCATCTTGTCTCTGAGAAGATTGAGGTTCACTGTTGACTGCCTGGAGTCATCATTATTCCCAGACTAGTTTTATAATTTGGAGTAGACTTCAGTTGTCTTTTATTTAATGCTGTATCTATCTTTAATCCGAATTTAATCTTGAAATTTTTAGGAGTAGAGTTCCTATAGTTGCAGATAGGATTTATTTCTACATAAATTAGAAAAATTATGTCTTAGTGGATAAACGGTTTGTAACTCACTTAAGGGTTATTATATTTCTATTTGATGAGTTTATCTTATCACTGTTTGTACAGTGAAAAAAATTAAGACTTAGAGATGTTAAGGTTAGACCATAAATGACCAGACAAAGGAATTGAACCCAGAATTACCTACAACAATAGTATAGAATTTCATTGTAAATTTTAATACTTTGTGGAAAAGATGTATTATAATGTAGCTAAACAAAAATGGAGGAAGGATATCTAGAAATAATTGCTCAGAAATAATGAACACTTTTACTTCATTAAAAAGGACTAACAAAATTGACTATTTTTCTTGAACAAAAATAACTTGAAGTCACTTTCCCTTGCATTTGTTTTTACCTATATGTCTCAGTAATACTGACTATTTCTTGTTTTACCAGCTTCAATCTGATTAATGATAAGAGACTATAAACTTTGTATGGGAAGAAAGGGACATGCAGGTTCCCAGTGACTTATTAGGTCATGTTAAGAGGGTAAAAAGAGCAATTAACTGAAAATTGATGGACATAATTAAATTTTTACTCCCTCCGCTGTTAAGTATGCCATGGGATTTACTCGCCTTTTGGAAAAAACTAGAGTGTAGGGAAGAGAGAGGATTTCTGAGGACAAGGGAGAGCTCATAATTGCTATCTAAGATGACACTGTAGAAGGAATGTAGTCACAGTAACAGGGACAGCTCTTCCTTAGTCCCCGCTGCCTAGAGCACCTGGAAACCCTGCTGTCTTTTCCTGAAGTCTGATGAAGAAGGTGGCCTCAGCATCATTTCTGAGAGACCAATGCCAGAGATTTTTTGTGTCATGAGGTCACAATTTGTGAATACCTGTAGGAAAGAAAAACAAAGAAAGCAGTGTTTCCCATTAGCTATTTTTTAGAGAACGCTTACGTAAAAGACGCAACTCCCTTTCAGTGTTTGTGATGCCTTCTGACGCAGCGTTTCTTACCCTGGGCGCTGCTGGCATTTTGGGGTGACACTTCTGTGTGGTAGGGTGTCTTGTGCATCATCAGCTATCGAGCACCACCCTTGGCCCACACCCACCAGCTGCCAGCACCTTCATAAACTCCCGTGGATGGGAACTGCTGCTCCAAACACTTCTGCTTTCAAATTTTTAATGACAGGAAACTTCAATATCTTTGCTTAATTTTTCTCTAGGTAGATATGCTATTTTGAGGGGAAAAAAATGGAAGGGCAAAATAATAGAATTACCAGAGTATGACTTAAATCCCAGGATTGAGTTTATACGTACTCATATTTGCTTCTTCTTTTGCTTAAAGCAAGTAAAGAAAGTCCTTCCAAGTTATCTGTGCTCGTTATAGTTTTAATTTGGGGGAATTTATTCATTTAATTCTGAGCACTAGGAATTTACTGTAGGAGCAAGGACATTTCCTTTACCTTTCCAGGATATAGGTTTAACTTAGCTGACATTAGGAAAGCCTGCGTGGAGAAGGCGGTGGTGGGAAACTTTGAGTGTGCCCGGCCTGCCGCCTTAACACGTTCAAGGTGAGCAGGTAAGCCCCTGACTTCCTCGCGCCCTCTCTTCTGACTTTGGTGGAATTGAGTTGCAGGTCGTTTCTTCTTCCCATTCCTATTGAGCCTTCTCCGCATCCCATTCTTGTCCCCCAGGTGTGGTGGCTAGGGCTGTTCTGAGAAGCTGTGTCTATATTTTCTTTGGTTACGTGTCTGCAGGTTGGATGCAGTTTGTAGTTAGCAGCGTGTGTGTGTTGATGGTCACTTGTAGTTGCTGCCAGGGCATTCATGATACTCTTCATTTTCTTGTGTGGGAGTTGGTGGAAACCACTGAAAAATATCGCGTAACTTTTTCTTCTTCCCACTTGGACATGTATTTTAATAGAGGAATGGATTCTATTATGTAAGTTTAGGGACAAAGGTCAAAGAAGAGGCTAAAATGGAGAAAAATGAGTTCAGTTTAGGGAATAGTTTTTATTTCGGAATTGTTTACAATTTCTAGGGAATGGTTATATGGCTAAGTGGACTGCATATGACTAAGTGGACTGAAATTTGGGGTCACAGTGGCATCCTGGTGTAGGTGTTTAACAGAGAAGTGGGTGTCATGAAGTCTTCTTTTATTGAATTTAAGCTGTGAACTCAAATGACTTAGTTTCAGGTTACTAGTTAGTGTATGTTGTATTCTATAAAAACAAAAATGCATAGACTATATCTGATACGCTTAAAATTTTAAAATTTAATTGCCACTGTTTAAAGTTTATAGGCTCTAACCACAAACAGTGCAGTGGTGAATTTCTGTGGGTCGCTAGGCTGTCGTGAGTGGCAGAGTTAAAACTAGAGGTAAAGTCTGTGACAATTGTCTGGTGCATTTTCTCCTGTGATATTCAGTGTTTGGGGTAATATATTAATATTAGTGTAATATTACTAATTAGTAATACCAATATTACTGTATTAATATATTAAGATTACTGTATTCTTGAACTAGAAAGTTTGGGTGTTTTGAAAAAATTAGGTACATTTAATGGTAGAAATCTGTGTTATGTACTCTAAAATTTTTATAACATTTGAACTTTTTGCAAAATACATAGTAGTAATGATTAATAATATGCTACTGGTGTTTTTAGGTTATTTTTGTGTGTGGCTTGTTGCTGCTGAGTTTTACTTGAACTGAGTATACCTTGCATGAACATATATCTATCACTTGTAATCCAGACAAGCTAATTTAATAGAATGTATATCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGGCGGGGAAGCCTGGTGGGCTGCCCGTCTATGGGGCCGCACAGAGTCGGACACGACTGAAGTGACTTAGCAGCAGCAGCAGTAGCATATCATTTCTAATCCAAACAAACACATTTTATAGATTGAACTGTCTGTGTCTTAGAGGTTGAGTGAGTTGCTTAAGGTCACGCACATAGCTACAAAGTAGCCAAGAGGACTTATTTTAACATAGATCTGTTCCCTTATAAGATCCACATTCTTTGTATTTATATCGTAAAACATTGCTGTTGTGTTTTAACATAGTCCTTAGGAATAATGGCAGTAGACAGCACTTGAATTTTACCCAAGAGAGATGAAAATTCATGAGGAAACTTCTGATTATGAAGATTATGGCAAAATGAGTGTATATTTCATTGATGTAGCTCTTGCATTTGGATTTAGGGTTTATCAGAAGTGTTACATTGTTACTGATGTAAGTGTGTAAGTGTGGTTAGGCATCTTTAAGGTCTGCAGTTCACATGTCTAAGGATACAGTGACAGTTGATGTGCCAAGTATTTATAGTGGTGAGCAGACCCAGGTCTTCCACCTTCTCACTTTTTTCTTTTTGCAAAAGGCCACCATTTTTGTAAATGCAAATTATGTTATTTTAAATGTTAACATGTGTAGCTTCATTATGGCTTAAAATGTTATTCCACTCTTGCTGGTATGGTACTAACACTGGGCACTTTTTTTTTTTTTTTTTTTTTACCTAGCACATTTGCTTTTAGTAAACCCATCACTTTCAGGATATGAGCAAATTCAGGTTGCAAAGTGAATTTTCTTCTTACTACTTGGGAATTTGTTTGTTCTTAAATACAG
Seq C2 exon
GTATTTTGGCCTCTCCACAGTCTGCACCTGGAAACTTGGACAATAGTAAAAGTGGAGAAATGAAAGGTAATGGAAGTGGAGGAAGCAGAGAAAATAGTACTGTTGACTTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018227:ENSBTAT00000065868:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.879 A=NA C2=0.897
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(31.5=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]