RnoINT0138563 @ rn6
Intron Retention
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11874562-11879173:-
Coord C1 exon
chr15:11878805-11879173
Coord A exon
chr15:11874678-11878804
Coord C2 exon
chr15:11874562-11874677
Length
4127 bp
Sequences
Splice sites
5' ss Seq
CAGGCAACT
5' ss Score
0.87
3' ss Seq
TGTTTTTTTTTTAAATACAGGGA
3' ss Score
7.4
Exon sequences
Seq C1 exon
GGGAAGGCCTGTCAGCCTCCCGCCATTCTTTGCGAACAGGTCTGTCTGCCTCAAACCTTTCCTTGAGAGGAGAATCGCCTTTATCCCTTCTTCTCAGTCATCTTCTTCCTTCTTCAAGAGCTGGCACCCCTGCAGGCTCAAGGTGTACCACCCCAGTACCCACCCCCCAGAACAGTCCTCCTTCCAGCCCCAGCTTAAGTCGCCTGACCTCCAGAAGTTCCCAACAGACTCAGCCTCAGGCCCCAGAAGTACTGGTGTCACCTGACAGGGATGATATTCCCAGAGTAGTAATTCATCCGCCTGAGGAAGACATAGAAGCACTGAAAGGCCAAGAGCAGAAGAATGAGGAAAATACTGACTTCACTCCAG
Seq A exon
GCAACTGTCCAGAGTCCTCCACGTGTGGTGCTTTCTGCCTCTGGGTCACTTGCACTGAGAATGCCTGTCAGCACATAGCTTGAGCAGCATATGTAGAGAATGCTTATGATTGACTTCTGCATGTTTTGTTCTTTACAGTATTACAGAAAAGGATACATTTATTAAACTTAGGTTGTAAAAATACTACACAGAAAATCAAGCCCTTATATATTTTTTCCCATTGGAATTTTAGAGGTCATGATATTTGAGTGCTTTAGGAACCATTTTTTGATATGCACTTTAGAAGTGTGGCTTTTCTTGTCCACTTGTAAGGTGAAGAAGCACATAATGGTAATGAAGAAGTCCTTTTCATTTGTTTGATGCTTTTCTTTAAAGAGTAGAACATCTTTACCTTCCTAATATGCCATGTTCATTTTCCCATTCTCTCTCTGAGAAGATTGAAATTCTCTTATAATTGCATGGAATCTTTATTTAAAGAGGAGTTAAAGTATTTTTGAACAGACTTTAGTTTTTTTATTTATGATGGTGTAGTTCCAAGTTTCCCCATTGTTTTTCAGCAACTGTAGCTCTATACTTATGGGGAGTATAGGTTATATTTTTTGTAAGACTAGATTACAATACTTATTTATGAAGTCTTAACCATAGTGATCTCTGCAGCCTCATAAATAAGTTTTGGTAATCTACTTACAAAAATATAACCTATACTCACCATAAGTATAGAGCCTACAGTTCTGAAAAACATGAGGAAAAACTTGGACTAACACCATCATAAATAAAAAACTAAAGTCTGTTCAAAACAATACTTTAACTCCTCTTTAAATAAAGGATTCCATGCAATTATAAGAGGAATTTCAATCTTCTCAGAGAGAGAATGGGAAAATGAACATGGCATATTAGGAAGTAAAGATGTCTACTCTTTAAAGAAAAGCATCAAACAAATTGAAAAGGACTTCTTCATTACCATTTATGTGCTTCTTCACCTTACAAGTGGACAAGAAAAGCCACACTTCTAAAGTGCATATCAAAAAATGGTTCCCTAAAGCACTCCAAATATCATGGACCTCTAAAATTCCAATGGGAAAAAATATATAAGGGCTTGATTTTCTGTGTAGTATTTTTACAACCTAAGTTTAATAAATGTATCCCTTTTCTGTAATACTGTAAAGAACAAAAACATGCAGAAGTCAATCATAAGCATTTCTCTACATATGCTGCTCAAGCTATGTGCTGACAGGCTTCTCAGGCAAGTTGACCAGAGGCAGAAAGCACCACACTGTGGAGGCTCTTGGACAGTTGGCCTGGAGTGAAGTCAGTATTTTCCTCATTCTTTCTGCTCTTGGCCTTTCAGTGCTTCTATGTCTTCCTCAGGCGGATGAATTACTACGTCGGGAATCATCCATCCCTGTCAGGTGACACCAGTACTTCTGGGGCCTGAGGCGTGAGCTCTGTTGGCGAACTTCTGGAGGTCAGGCGACGCTGGGAGGCTGGAAGGGAGGACTGTTCGGGGGTGGGTACTGGGGTGGTACACCTTGAGCCTGCAGGGAGTTGCCAGCTCTTGAAGAAGGAAGAAGATGACTGAGAAGAAGGGATAAAGGCGAATTCCTCCTCTCAAGAAAGGTTTGAGGCAGACAGACTGTTCCCGCCCACCAGGCGGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTTCTTAAAAAAGAAAACTTTTAAGGTAAAATTTTTTGTTAATTGAAAATTTAGGTACACATTTTTTTTAATACCATGAGTTTTTATAACAAGATGTATCAGCTTTTCTGAATAGATGAAATGAAAATGGATGGATTTCTGAAAGTAAAGGCCAATGTTACTGAAGGGAACTCACAGGATCGGCCATCATTACTTCTTCCTTAACTGCCATTTGCTCGTAGAACATTCAGCCATTTCTTTTTTTTTTTTCTTTTTTCTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCACTGTACCACTGAGCTAAATCCCCAACCCCCATTCAGCCATTTCTAGTAGGAGTCCTAGAACCTGATATATAGAGGAGGACTATGCAGTGATAGGAAGCTTCAATTCCCGCTGACTACCTTGATTCCTAATCATGGGAACTTGAACTAGTAGCCAGAAGACTTTCCTAATTAAGACAGCTTTAACGTAGCTGAGTTGGAAAGAGAATCTTGGTAGAATACTTTTTCAGAAAATTTCTTTTCTGAGAGCAAGGTCTTGTGTAGCTGAGGCTAGCTTTGAGCTTCTAATCCTTTTGTCTCTACCTTCCAAGTGTTAGTGTTGATAGGATAGTGCCACTGTGCTTGGCATGTTCTTAACATGCACCTGCCATTTTGAAAAAGGGACAGGTTGAAGATGACCAAGCAGTTTCAACTGAACTTTATTTTTTCTTCCTTTTCCTATCGACTTTGCAAACACACCCCCACCCTCACAAATTTCCTTGTTCTTAGCTCTCAAATCTGATGGCTGAGTTCTACTAAAAGCTGCATTGTTTTTGTTTTAATTATCTGTAGAATGCAGATGTAGAACAGTCAGTACCAGAGTACTAGTACTCAGTACCAGTGCCTAGGACTCAGTCACAGTTGTCACCAGAGTTTTAATAAAGTGCTTCTTGATTTTTCTCGTGTGGGAACATTTTGAAGCCACCAGTAAGGTTAATTTCTCTCAGCCTTTTTGGGCAAGGAAGAAACACTATTCTTAAAACATAAAGGCAAAAGGTCAAACACAAGGAATCTTAATATACTTTTCATGTTAAGTCAACAATTTCAAAAAATATTTATTTTAGGAAGTACCTTCTATTTCAGAATTGTTTAATTTGTCTAGAGAATTATCTACATGCTTAAATTAAGTGCAGGGCTTTTATATGAAGGCTTTTCATTTACAATGATACCCCAGTTTGTTGCACAGAAGTAAATATCACAGAGGACTTTGCCCAGAGTTGAACCTGAATGTCTTAATTTTATATTCAGTAGTTATAATTGCTCTGTTCTATAAGAATAAACATGCTTGAATATATCAAGTACATCTGAAAAGCTTGAAATTGTAGAAGTGATACTAATTATGACAAAGAACTGATACTAATAAACATTAACTGAATTTCTGTACACAAGTAGGTTGTATTATATTGCAGTCTCTTCCCTTTAAAATTTCTAGTGTTTGAAACATTGATTAGTTTATATTCTTGGACTAGAAGGTCTTTTATCTTTGAAGAAAAATGAGATGTGTTTAATGTTAGAAATTTATGTGATGCAACTTAGATTTTAAGTTTTTTGAGATTTGAGCTTTTTATAGAGCTCTTTGTGGTCAAGATAGTTAGTGTGGATGATGCTTTTAAGCTGTCTTACCATGAAGTGCTGCTGTTGACTGTCAGCTGAAGTGAACATGCATCATAAATCATTCAGACAATAACCATGCCATGTATACACTAATTTATAGGCTTGCTGAACCATAGAGACTGAATTAGTTGAGCACATGGCTACAAGTGATGAAGTTATTTAGCCAAATTCCATTGATTATGTACTTTTAACCTTTGTACTTGGAAGACTTGTTTATGGTCTTTTACTTAGATTTCTTAGGAAGACTGACAGTAGAAATTAGACGTACTATTAAAGAAAATCAAAATTCTTGAGGACGCTTATGATCAAGAAAGATTACATATAGCTCTTACATTCTCTGAATTGCACTAAGAATTTGTCAGATTCATACAGTATTGATATGAGCATCCTAGATGTAGCCAGGCCTCACTGAGTTCCATTCAATTACATGGGCTATGGATATCAAAGTGTATTATCTAGACATATTTGGAGCGATAAGACTCTGGACTTAGCTCAAATCTTTGGTAGTTCCATACTGACTCACGTTTCTAAAGGCTACTGTGTACATTCTAGTATAATGCTTATAAATTAAAATACATAACTTCATCCTGTTCATGTGTTCTAATTCACGTTGCTAGTGTGAGGCTAATGTCTGGCACGTTTTAACCTCTCACCTTTGCTTCATAATCAACCATCGCTTTAAGGATATGAGCAGAATCAGGCTACAGGGTTTTCTCCTTACTGATTTGGTTGTGTGTTTTTTTTTTAAATACAG
Seq C2 exon
GGATTTTGGCTTCTCCACAGTCTGCTCCTGGAAACCTGGACAGTAGTAAAAGTGGTGAAGTGAAAGGTAACGGAAGTGGAGGAAGCAGAGAAAATAGTACTGTTGACTTTAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957:ENSRNOT00000008759:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.887 A=NA C2=0.915
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(31.5=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]