RnoEX0082868 @ rn6
Exon Skipping
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11874562-11881930:-
Coord C1 exon
chr15:11881742-11881930
Coord A exon
chr15:11878805-11879173
Coord C2 exon
chr15:11874562-11874677
Length
369 bp
Sequences
Splice sites
3' ss Seq
ACTTATTTGTTTTATCTTAGGGG
3' ss Score
8.51
5' ss Seq
CAGGCAACT
5' ss Score
0.87
Exon sequences
Seq C1 exon
ATATGGTGTTAGACAACATGATAGCGTCTGGCCAGCTAGATGACTCCATAAGGGAGAATGTTCGAGAAGCTCTTCTGAAGAGACATCATCATCAAAATGAGAAAAGGTTTACAAGTCGGATTCCCCTCGTTCGATCCTTTGCAGATATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAAAGGAATG
Seq A exon
GGGAAGGCCTGTCAGCCTCCCGCCATTCTTTGCGAACAGGTCTGTCTGCCTCAAACCTTTCCTTGAGAGGAGAATCGCCTTTATCCCTTCTTCTCAGTCATCTTCTTCCTTCTTCAAGAGCTGGCACCCCTGCAGGCTCAAGGTGTACCACCCCAGTACCCACCCCCCAGAACAGTCCTCCTTCCAGCCCCAGCTTAAGTCGCCTGACCTCCAGAAGTTCCCAACAGACTCAGCCTCAGGCCCCAGAAGTACTGGTGTCACCTGACAGGGATGATATTCCCAGAGTAGTAATTCATCCGCCTGAGGAAGACATAGAAGCACTGAAAGGCCAAGAGCAGAAGAATGAGGAAAATACTGACTTCACTCCAG
Seq C2 exon
GGATTTTGGCTTCTCCACAGTCTGCTCCTGGAAACCTGGACAGTAGTAAAAGTGGTGAAGTGAAAGGTAACGGAAGTGGAGGAAGCAGAGAAAATAGTACTGTTGACTTTAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=0.887 C2=0.915
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(16.1=100)
A:
PF075658=Band_3_cyto=FE(31.5=100)
C2:
PF075658=Band_3_cyto=FE(14.2=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTTAGACAACATGATAGCGT
R:
AGTCAACAGTACTATTTTCTCTGCT
Band lengths:
294-663
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]