MmuEX0043430 @ mm10
Exon Skipping
Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:14739725-14746083:+
Coord C1 exon
chr14:14739725-14739913
Coord A exon
chr14:14742414-14742782
Coord C2 exon
chr14:14745968-14746083
Length
369 bp
Sequences
Splice sites
3' ss Seq
ACTTATTTGTTTTGTCTTAGGGG
3' ss Score
9.39
5' ss Seq
CAGGCAACT
5' ss Score
0.87
Exon sequences
Seq C1 exon
ATATGGTGTTAGACAACATGATAGCATCTGGCCAGTTAGATGACTCCATAAGGGAGAACGTCAGAGAAGCTCTTCTGAAGAGACATCATCATCAAAATGAGAAAAGGTTCACGAGTCGGATTCCCCTGGTTCGATCCTTTGCAGATATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAAAGGAATG
Seq A exon
GGGAAGGCCTGTCAGCCTCCCGCCATTCTTTGCGAACAGGTCTGTCTGCCTCAAACCTTTCCTTGAGAGGAGAATCGCCTTTATCCCTTCTTCTCAGCCATCTTCTTCCTTCTTCAAGAGCTGGCACCCCTGCAGGCTCAAGGTGTACCACCCCAGTACCCACTCCCCAGAGCAGTCCTCCCTCCAGCCCCGACTTAAGTCGTCTGGCCTCCAGAAGTTTCCAACAGACCCAGCCTCAGGCCCCAGAAGTACTGGTGTCACCTGACAGGGATGATATTCCCAGAGTAGTAATTCATCCGCCTGAGGAAGACATAGAAGCACTCAAAGGCCAAGAGCAGAAGAATGAGGAAAATACTGCCTTCACTCCAG
Seq C2 exon
GGATTTTGGCTTCTCCACAGTCTGCTCCTGGAAACTTGGACAATAGTAAAAGTGGTGAAATGAAAGGTAACGGAAGTGGAGGAAGCAGAGAAAATAGTACTGTTGACTTTAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.190 A=0.871 C2=0.786
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(23.5=100)
A:
PF075658=Band_3_cyto=FE(31.5=100)
C2:
PF075658=Band_3_cyto=FE(14.2=100)
Main Inclusion Isoform:
ENSMUST00000057015fB3788
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTTAGACAACATGATAGCA
R:
AGTCAACAGTACTATTTTCTCTGCT
Band lengths:
294-663
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types