HsaEX0059845 @ hg38
Exon Skipping
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4 member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr3:27424037-27434104:-
Coord C1 exon
chr3:27433916-27434104
Coord A exon
chr3:27431298-27431669
Coord C2 exon
chr3:27424037-27424152
Length
372 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTGTTTTATCTCAGGGG
3' ss Score
7.56
5' ss Seq
CAGGCAACT
5' ss Score
0.87
Exon sequences
Seq C1 exon
ATATGGTATTAGACAACATGATAGCTTCTGGCCAATTAGACGAGTCCATACGAGAGAATGTCAGAGAAGCTCTTCTGAAGAGACATCATCATCAGAATGAGAAAAGATTCACCAGTCGGATTCCTCTTGTTCGATCTTTTGCAGATATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAAAGGAATG
Seq A exon
GGGAAGGCCTTTCAGCCTCCCGCCACTCTTTGCGAACAGGTCTGTCTGCCTCAAACCTTTCCTTGAGAGGAGAATCACCTTTATCTCTTCTTCTTGGTCATCTTCTTCCTTCTTCAAGAGCTGGAACCCCTGCAGGCTCAAGGTGTACAACCCCAGTACCCACCCCTCAAAACAGTCCTCCTTCTAGCCCTAGCATCAGCCGCCTGACCTCCAGAAGTTCCCAAGAGAGTCAGCGTCAGGCCCCAGAACTACTGGTTTCACCTGCCAGTGATGATATTCCCACAGTAGTAATTCATCCGCCTGAGGAAGACTTAGAAGCAGCGCTGAAAGGCGAGGAGCAGAAGAATGAGGAAAATGTTGACTTAACTCCAG
Seq C2 exon
GTATTTTGGCCTCTCCCCAGTCTGCTCCTGGAAACTTGGACAATAGTAAAAGTGGAGAAATTAAAGGTAATGGAAGTGGTGGAAGCAGAGAAAATAGTACTGTTGACTTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=0.804 C2=0.861
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(16.1=100)
A:
PF075658=Band_3_cyto=FE(31.6=100)
C2:
PF075658=Band_3_cyto=PU(16.2=76.5)
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTATTAGACAACATGATAGCTTCT
R:
CTTGCTGAAGTCAACAGTACTATTT
Band lengths:
302-674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development