MmuALTD0013104-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:14739725-14746083:+
Coord C1 exon
chr14:14739725-14739830
Coord A exon
chr14:14739831-14739913
Coord C2 exon
chr14:14745968-14746083
Length
83 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
GTGTGTTTTCTTAAATACAGGGA
3' ss Score
7.34
Exon sequences
Seq C1 exon
ATATGGTGTTAGACAACATGATAGCATCTGGCCAGTTAGATGACTCCATAAGGGAGAACGTCAGAGAAGCTCTTCTGAAGAGACATCATCATCAAAATGAGAAAAG
Seq A exon
GTTCACGAGTCGGATTCCCCTGGTTCGATCCTTTGCAGATATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAAAGGAATG
Seq C2 exon
GGATTTTGGCTTCTCCACAGTCTGCTCCTGGAAACTTGGACAATAGTAAAAGTGGTGAAATGAAAGGTAACGGAAGTGGAGGAAGCAGAGAAAATAGTACTGTTGACTTTAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733-18-15,19-15,20-15-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.786
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(23.5=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCCAGTTAGATGACTCCA
R:
TCTGCTTCCTCCACTTCCGTT
Band lengths:
169-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types