HsaALTD0006039-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:11033]
Coordinates
chr3:27465528-27475595:-
Coord C1 exon
chr3:27475446-27475595
Coord A exon
chr3:27475407-27475445
Coord C2 exon
chr3:27465528-27465643
Length
39 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
GAATTTGTCTTTAAACATAGGTA
3' ss Score
6.13
Exon sequences
Seq C1 exon
ATATGGTATTAGACAACATGATAGCTTCTGGCCAATTAGACGAGTCCATACGAGAGAATGTCAGAGAAGCTCTTCTGAAGAGACATCATCATCAGAATGAGAAAAGATTCACCAGTCGGATTCCTCTTGTTCGATCTTTTGCAGATATAG
Seq A exon
GCAAGAAACATTCTGACCCTCACTTGCTTGAAAGGAATG
Seq C2 exon
GTATTTTGGCCTCTCCCCAGTCTGCTCCTGGAAACTTGGACAATAGTAAAAGTGGAGAAATTAAAGGTAATGGAAGTGGTGGAAGCAGAGAAAATAGTACTGTTGACTTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867-13-15,14-15-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.201 A=NA C2=0.819
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(13.2=100)
A:
NA
C2:
PF075658=Band_3_cyto=PU(15.2=75.0)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGGATTCCTCTTGTTCGA
R:
TCTCTGCTTCCACCACTTCCA
Band lengths:
128-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)