MmuALTD0013104-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:15572239-15578597:+
Coord C1 exon
chr14:15572239-15572388
Coord A exon
chr14:15572389-15572427
Coord C2 exon
chr14:15578482-15578597
Length
39 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
GTGTGTTTTCTTAAATACAGGGA
3' ss Score
7.34
Exon sequences
Seq C1 exon
ATATGGTGTTAGACAACATGATAGCATCTGGCCAGTTAGATGACTCCATAAGGGAGAACGTCAGAGAAGCTCTTCTGAAGAGACATCATCATCAAAATGAGAAAAGGTTCACGAGTCGGATTCCCCTGGTTCGATCCTTTGCAGATATAG
Seq A exon
GCAAGAAACATTCTGACCCTCACTTGCTTGAAAGGAATG
Seq C2 exon
GGATTTTGGCTTCTCCACAGTCTGCTCCTGGAAACTTGGACAATAGTAAAAGTGGTGAAATGAAAGGTAACGGAAGTGGAGGAAGCAGAGAAAATAGTACTGTTGACTTTAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733-9-9,10-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.202 A=NA C2=0.769
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(19.6=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(14.2=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGTTCGATCCTTTGCAG
R:
GCTTCCTCCACTTCCGTTACC
Band lengths:
113-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: