RnoINT0153392 @ rn6
Intron Retention
Gene
ENSRNOG00000001165 | Tmprss3
Description
transmembrane serine protease 3 [Source:RGD Symbol;Acc:1310135]
Coordinates
chr20:9920915-9921497:-
Coord C1 exon
chr20:9921454-9921497
Coord A exon
chr20:9921081-9921453
Coord C2 exon
chr20:9920915-9921080
Length
373 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
AAACCTTTGTTCCTCTGTAGCCT
3' ss Score
7.75
Exon sequences
Seq C1 exon
GGAAGGCTGCACCTCAGGCCATGTGGTCACCTTGAAGTGCTCAG
Seq A exon
GTAAGTGTCTGAATATGGAGGGGGCCACACGGAAGACTGCACTGGTGGAGTCATAGCCCCACTGGGGACTGCTCAAGACCCCTTCTCCTGGATGCTAGCGTGGGGCTAGGTACCAGGAGGTCATTGCCATCAGGGACACTGTTGATGGGCAGCTCTCTGCACTAACAACTCTTCCCACTGCCTCCCACAAACCCCACCCACCCCCTAGTCTTCTGTCTGCCTGACCCTCTCATTACCCCAGCTCCAGCTTTGGCAGGATTGTGAGCGCTGGGTAGGGGACAGGAATTTTGCTAGGTAGGAGGTTTGGGGTGCTGACAAAATTTCCTCCAGCAAAGGTCACAGAATTTACCCATAAACCTTTGTTCCTCTGTAG
Seq C2 exon
CCTGTGGCATGAGAACTGGCTACAGTCCCCGCATTGTGGGTGGAAACGTGTCCTCGCTCACTCAGTGGCCCTGGCAGGTCAGCCTCCAGTTCCAGGGGTACCACCTATGTGGGGGCTCCGTCATCACCCCTCTGTGGATTGTCACCGCTGCGCACTGTGTTTACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001165:ENSRNOT00000001540:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.0=100)
A:
NA
C2:
PF154941=SRCR_2=PD(5.0=8.9),PF0008921=Trypsin=PU(19.4=78.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGCCATGTGGTCACCTT
R:
TCGTAAACACAGTGCGCAG
Band lengths:
198-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]