RnoINT0153411 @ rn6
Intron Retention
Gene
ENSRNOG00000008058 | Tmprss5
Description
transmembrane serine protease 5 [Source:RGD Symbol;Acc:628625]
Coordinates
chr8:53426843-53429420:+
Coord C1 exon
chr8:53426843-53426995
Coord A exon
chr8:53426996-53428483
Coord C2 exon
chr8:53428484-53429420
Length
1488 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GTCTCTTGGCTCCGTGGCAGGTC
3' ss Score
6.82
Exon sequences
Seq C1 exon
GGAGACAGTGGGGGACCCCTGGTGTGTCCCAGTGGTGACACGTGGCACCTTGTAGGGGTGGTCAGCTGGGGTCGTGGCTGTGCAGAGCCCAATCGCCCAGGTGTCTATGCCAAAGTAGCAGAGTTCCTGGACTGGATCCATGACACTGTGCAG
Seq A exon
GTGAGTGTGGGTCAGAAGAGCAGCACTGTCTCTGAAAGAACTGCCTTAGGACACCGGGGACTTATGAGGGCTGGAAATAGGGCTAGGGAATGTTCACCAGAGAGGGGAGAGAGAGAAGGAACATTTATAACACAACCCTCATGGATTTCTAGTAATATGAGCACTAGCTGGGAAAGGGTAAACTGAGTCTGGGACCTGGATCTGCCTTTTGGGGGTGACCTTTGGCAAGTCCCTACTCTTGGTAAGCCCACGATTTCTCGTCATAACCATCTTGGCTGTGTTTTCCCCTTTGGTGGGGATTAGAAGAGAATTCGTCCTGAGCCTGACTAGGCTTAGGGTGGGTAGCCACAGTGTTACTGCTCTATCATCTACTCCAACATCACTCATCCGTGACTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCTCATCCATGACTTCTAAAGCAGATGCCAGCAGCTGCATTTCCTACTCCACAGACAGAGCTCAGGACTTAGCAGTCAAAGTCTTGGATGACTCTCGGGTTGAATCTGTTTAGAGAGAGGACCAAGTGTGACAGTGCATATCAAAGCATAGTATTGGGCAGGGCAGATGGCAATGTGGGTAAAGTACTTGTTATGTAAGTGTAGGGAGTTCGAATCCCCAGAACTCATGGACAGCTGGGGTGGGTCACAGAAGGGTATAGTATGTATATGCACTCCTAAGCAAGATGGGAGGCAGAGACAGGACGGTATTTTGAGTCTCCCAGGCTGTTGCTGGGTGTACTCAGCAGCCAAGAAGATGGGTGAATGGTGCAGACTGACACCTGAGGCTGTCCTCTGACTTTACAGGTCAATCATAATCCCCCATCCCCCACACCACAGAAAGATTTTAAGAAGCACAGTATTTGTGTTAAGTAGTCTTTCACAAGCTGTGATGGTGGACAGCATCCCTAAGGTTGGGGTTCAGAACCATTGGCATGCGGCAAACTCTAGAGCTTTGGGGTTCTGCATCCATACATAAATCTTATTTAAAAAAAAAATCCTAGAGCAGCAGATCTGTGTGGGATCATTTGGTAGACAGACGTCTACCTTCCGAATGTGATGTGCTAATATAAAGTCACTTAAGGGGATGAGGGATTTAGCTCAGTTGGAAGAATGCTTGCCTAGTGTTCAAGTAGTCCTGGGTTTGAGCCATAAATGGGACATGGTGGTGCACATGTGTATTTGGAACACTTAAGGGATGGAGACAGGAGGATCTGAAGTTTAATGTCGTCTTTGGCTAGAGTTCCAGACCAGTCTGGGGCACATGAAATCTTGTCACCTGCCTGGCATGAGGTAGAGCCACATAGTGACTCCTTGTTAGATGACACTGGTCTCTTCAGTCTTATTACACAGCAATGTCTCTTGGCTCCGTGGCAG
Seq C2 exon
GTCCGCTAGCTGAAGAAGAAGCAGCTGCTGCCTGCGACACAGAACTGTGGATCTCCCATGGATCATCCCAGACTGAGGACTAGCATCTGGGTCACTGGGCCTTTCCCCAAAGGCTCTGACTTCTAGTTTGTCTTTCTCATCTGAGAACCTCCACAACAGAGAAGAGTCTGGGGCTGGGTTGGGAATGATGATGAGAGGAAGGGATAAGAAGACAGAGGAGACAGAAGAGGCTTCTGGAAGCATCTGGGAGACTGCCCTCTGCTCTCCACACACCCCATGTGCATCCACTGGGAGGATGCTGGAGGTGCCCCAGCCCTGTTTTCTTCTGAGGCCAGGGAAGGCCTAAGTTCAACTTTAGAAGATGCCCTGTCTCAAGGGTCTTAGGCAGATAATGTTAAGGTTGGACCAGCTCAGGTAAAGGCATCGAAATCAAGATCCCCCCCATGCTGGTCCTGTTTTGAGGTAACTCTAAGTAGCCCTCCGTGAAGCAGAGGTCTACAAGGTAAGAAGGATGGAGTTGGGTTAGGATGCTGTTTTTCACACGACAGTTCTGTAAATTGCTTGATATTAAGTGGAGATTATATATAATCTTGGTTGAGGTCCTCCCTCTCTGTATTAGCTAATGTGATGAAATACACGGTCAAGAGAACTTACTTTGGCTCAGAGACAAAAGATCCAGTCTACTGTGCTGAGGAATGTGAGGTGCTACTCTGTCAGGAAGCAGGGAGAGGAGGTGCTGGGGCTTTGGTCGTAGACCTCGGCCATTGCTTAGAGGCCCTAACATACAGGGCAAGTCTCAGTTACACCTCTCAGGAAAGTCCCTCACAGATGTACTTAGAGGTGTGTCTCCCAGGTGATTCAAAATCCAGCATACTTGTCAGCAAAGACTAGCCATCACTGTCACACGTGTTACTGAATAGAAATACAAATTTCCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008058:ENSRNOT00000011107:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(19.5=88.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGGTGTCTATGCCAAAG
R:
ATCCTCCCAGTGGATGCACAT
Band lengths:
356-1844
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]