RnoINT0153451 @ rn6
Intron Retention
Gene
ENSRNOG00000002145 | Tmprss7
Description
transmembrane serine protease 7 [Source:RGD Symbol;Acc:1304655]
Coordinates
chr11:60113766-60114796:+
Coord C1 exon
chr11:60113766-60113804
Coord A exon
chr11:60113805-60114567
Coord C2 exon
chr11:60114568-60114796
Length
763 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
3' ss Seq
GGAAGGTTCTCTCTCCACAGACA
3' ss Score
7.29
Exon sequences
Seq C1 exon
CTGGGCTCCGGTCGGATTACTCTTCAGCGGTAGGATCTG
Seq A exon
GTAAATTCGTGTTTGTGTGTGTGTGCGCGCATATATATGTAATACATACATATGTGTGTGTGTGTGTGTGTGTGTATGCTATACTTGGCTTTTTCTAATGATGTGATCTGTTAATGTCCTTTTAGTAGTGAGTGACAGCAATATAAGTGACTTTAGCACAAAAGAAACCTGACTGGCTTATGTATTAAATACTAGAGACAGATATTGATTATGTTTGCTTCAGGCATGGTTGGAATCAAGTTCTAAAATAAAATGCTGGAGGGACCCTGTAATAAAACCTTTTTATTCCAAGGCTTTGCTATGAAGCACAGCTTTCATTGTGGCAGCAAATCAACATTTCAGCTTGGTCACTTCTCAGTCATAGTGGAAAACTCTGGCACTCAGACTTCATGAAAGTTCTTATAGATCTTCTGAACCGAATCCCATTATGCAGACTGGGCTATGTAGCCAATCCTAAGCCAATTTCTTTGACCGTTTGGCCAGTCTAGCCATGTGTCCAATTATAAAATCAGAGGTAAATTTAACCCCAACTAAAGTGTGAGCTAAGTAGAGGCAGTTTCTCAATGTAATAGGTTCTGTCAGCAAAGGAGAGGAATGTTTAGACTGGCAAGGAAAACAAATGTCCTCCAAATGACAGCTTTTGCTCACTACTCTTCTATAGAGGTCTAGAAAGGTCATACCTTGAGAGGAGGGGAGGGTGGGAAGGAGGGGAAGGAGGAAAGGGAAAGAGGAGGAGAGACTAAGGAAGGTTCTCTCTCCACAG
Seq C2 exon
ACAATGGCTGCTCCCAGTACTTCTATGCAGATCATCTGACCCTCCGCTACCCTCTGGAGATTTCCGCAACTTCGGGACAGCTAATGTGTCACTTCAAGCTGGTGGCCATAGTGGGTTATCTGATTCGTCTCTCAATTGAGTCCATTCAATTAGAAGCTGACAACTGTATTACAGACTCCCTAACTGTTTACGACTCCCTCTTGCCAATCCGGAGTGCCATTCTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002145:ENSRNOT00000045521:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(65.8=94.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCGGTCGGATTACTCTT
R:
CTGTATAGAATGGCACTCCGGA
Band lengths:
265-1028
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]