RnoINT0156152 @ rn6
Intron Retention
Gene
ENSRNOG00000055524 | Trip10
Description
thyroid hormone receptor interactor 10 [Source:RGD Symbol;Acc:621145]
Coordinates
chr9:9694787-9695269:-
Coord C1 exon
chr9:9695102-9695269
Coord A exon
chr9:9694897-9695101
Coord C2 exon
chr9:9694787-9694896
Length
205 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
GATCCTGTCTCATCTTGCAGACC
3' ss Score
11.43
Exon sequences
Seq C1 exon
CCGCGTCCCCCATCCCTGTCCCTCCTGGGGGGTCACCTACCCTCCACACTGTCTGATGGACCCTCATCCCCCCGTTCTGGCCGTGACCCCTTGGCCATACTGAGCGAGATCAGTAAGTCGGTCAAACCGCGGCTAGCATCCTTCCGCAGCCTCCGAGGCAGCCGTGGG
Seq A exon
GTAAGTTGAGGCCGGATGGTGGGACCCTGGGCTCTTTCCTGCTGCCTGCTGGGTCCCCCAGATTCCAGCTTTGCTCTGTGCATGGCCTCACTCCTTAAAATTCCTGCTAGGGGAGGAAGGTGGACCTGGTATTTCAGGAGCGAGAGAGGCGCTTGGCAAACATAGGGTCGCAAATCCTAAACTCAGATCCTGTCTCATCTTGCAG
Seq C2 exon
ACCGTGGTCACCGAAGATTTCAGTCACCTGCCCCCGGAGCAGCAGAGAAAGCGACTCCAGCAACAGTTGGAAGAGCGGAACCGAGAGTTGCAGAAGGAGGAGGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055524:ENSRNOT00000082341:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=NA C2=0.946
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF143891=Lzipper-MIP1=PU(34.5=78.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCCCCCATCCCTGTC
R:
CTCTGGTCCTCCTCCTTCTGC
Band lengths:
276-481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]