GgaINT1031089 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr8:12822853-12825578:-
Coord C1 exon
chr8:12825375-12825578
Coord A exon
chr8:12823012-12825374
Coord C2 exon
chr8:12822853-12823011
Length
2363 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TTTCTTTATTTCCACATTAGCCA
3' ss Score
3.58
Exon sequences
Seq C1 exon
GACTCCCAGCTAGTGATAGACTGCTTCAAATCTGGTTTTGAACCTCCTGGAGATTTTCCATTTGAAGACTACAGTCAGAATATTTACCGGACTATCTCTGATGGAACCATCAGTACACCAAAGCAGGAAGGAATGAGAATTGATTCAAAAACTACAGTGGGCAAGGCGAAAGGAAAGCTGTGGCTATTCGGAAAAAAGCCAAAG
Seq A exon
GTAACAATTCTGAAATTACTATTTGGAAAATTAAAACGGGAAGGTTCAGAGTAAATGGAAGTAGCAATAATTTATTTTTAAAATACATTGTCCATGTACTCATCTGTTTTTTGATGACGTACAGTTTGAGTAAGGTTGGATATTTTTTATCATACTAAAAATCGGGTTTCAGTGGAAGGAAGTTTTGCGATTCCTGTAGTGAGCTGTGTCCTGTCATGATTTTTATTCATTATTTGATGTTCTGCATAGGTTGAAATACAGTAAATAAAAGTAGCTTCCAACTTCTCTAATTTTTCGGAGTTGCTGTAAAGACTTTCTGTGATTGCATAGAAAAAGTGTTGATTTTGAACGTAAAAATAAGCAGAACAAATGGAGAGGATGTGTTTTATGCTTTGGAATCAGGCAGGCTTCATATCTCTTTAATACTACAAAAAGCAACCCCCTTTAAAATGTCCTGTTTTATATATGTTTATCAATAGGAATAGTACATAATTTTATTGCTTTTAACTTAACGTGCTAGTTTTGAAAATATTAAAACGTACCGTAATTCCCTGATAAAACATCCTGTTGAAGATCTATACAGGTAAATATCCCAGAGGAAATGTAACTATGAAAAAAGTAAAAATATGCCTATGCTCAAGAAAAAGTGCAAAGCAGGTACATATTTAAATGTTATGCTAGGATTTCAGCTAGTATCAGAGCATGTAAGTGAGTCTTTTTAATGATTCCCTCAGAGTTCAGTGAGATTGTTTTAATGTTCCAGATTGGTTTCTGCTACATTGTAGAAAGCTGCTCTTACAGCTCATGAGGGCTGGGATTTATTTTCCAGTTGACAGCATTCCAAGCAAGCAGATCTTTGCAGAAAAGGTTCAGCTGATTCCTTTTCTCCTTCTCAATACCTTATGTGTAACTGCAGCTGTGTGAAAATGAAAACTGATTCTTTACCTTTCATGCAGTATAATTAATGATTGGTAGTAGTTTATCATTTCAGCATGTTACCATCTTTATTGCATTTGGCTGCAGTCACGACTACCAGTTTGGTAACAAGCCCTCTGTCCAAGAATTTTGCATGTGTGCTCATGCGCACACACACCCTCTTCCACAGACAGTAAAACAGGGATGATCTAAATGTGCTTCTGCTCTGGATGTTTACTGTAGATATAAGATACTCTGTAGCATGATGACAGCTGGAGAAAGCTGTCGGGACTATTTCCCTACTCTTTCTTCTCCCCAGGTTGTTCACCTCTTCATAGAGGTGACTATGAATGCTACATACTATTTCCTATATGGAATCACAGACGCACAAATATGTATAAATTCTACATATTCTTCCTGAAGTACCTGGGATAAATGGAAGATTATGTTCAGTTTTTATTTTGGGGCAGGAGGAAGAGGTGTGGGAGGGAGGGATTTATGAACACACTTAAAAAAAAAAAAAAAAAAAAAAAAAGGCAATTGGAAGAAAAATATATATCAGAATATATATATATATGTTTGGAATTGTATGTATTTTATATAAATAGTATGTTATTTGTAATATTTCCTATAAGAATATAAATACATAACATTATTAAGGCATTTCAAAATTTTAGCTAATAGAAAACCAAAGCAAAAATACTAACTTACTGTATTTGAGGTATTTGTGGTGGCATTTGGACCTTCATTTAGCTTGAACTGTGGCTGGTCTTCCTTATGTATGTTTACCTATTTTTTGATGTTGTCAGACAGAAGAGCCTTTTGGAAAGGGAGTGAATTGTGTAGCAGAGAAAATGGAGAAACTGAAATAGGCAACAGCAGCCAGAGCAGGAGAGAGAAACAAACAGTCAGAGGATAATATTTAAAAAGGGGAGGAAGAAAGCAGGGGAAGTTCTAGTGATGATGTTGATTAGGAATGCTGTGCAGCCATTTTGCAAGTCCAGTTTGATCACAGAGGTCTCAGTAGACCTCTTTCTTGGTCATTCTCCATGTACGTACGTACTGTTTCTATTTCTAACTTACCTGATAAGGTACATCAAAATGTAGGAAGAAAACGTGAGCACAGTTGCACAAATTTCCAGAATGACCATAACTAAAGTTGGAAAAAGCAGAACTTCCTGTTCTAAAAGAACAGAGAAACAAGTTTGGAATCGTTTTAAGATCTGAGGAAAGTTGAGTCTAGAGCTCTCTTAAATATTCCTCTGTCTCTGAAGATTAATTCGTGACAGCAACCTTTTAAAACCCGCACAGTAATGGCATAAACGTGTCTGTGAAACATTAAAGGTGTCTGTGATAGATGGAAATTTTGCTTTTATAAGACAGAATTTTCATTTTAAAATCACTATGAACATTTGGCTTATTTGTTGCTTTCTTTATTTCCACATTAG
Seq C2 exon
CCACAGTCCCCACCCCTAACCCCTACTAGTTTATACACATCCAGTACTCCTAATGGGTCCCAGTATCCCATATTCTCCATTGAACCAGTGCATTATTGCATGAGTGACATAAAAACAGGGAAGCCCAGAATTCCTTCTTTCAGAAGCCTCAAAAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850:ENSGALT00000009401:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]