DreINT0069258 @ danRer10
Intron Retention
Gene
ENSDARG00000020131 | fnbp1l
Description
formin binding protein 1-like [Source:ZFIN;Acc:ZDB-GENE-040801-155]
Coordinates
chr8:15028441-15032585:+
Coord C1 exon
chr8:15028441-15028644
Coord A exon
chr8:15028645-15032475
Coord C2 exon
chr8:15032476-15032585
Length
3831 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AATAACCTGTGTTTGTACAGGCG
3' ss Score
7.22
Exon sequences
Seq C1 exon
GATTCTGGGATTGTAGTGGAGTCATTCAAGTCGGGTTTTGAACCCCCTGGTGATTTCCCTTTTGAAGACTTCAGTCAGAACATCCAGCGAACAGGGTCAGACAGCACCATTGGGACCCCCAAAACAGAGGGAGGCAAACCAGACCCCAAACACGCAATCAGCAGGACCAAAAACAAACTCTGGCTCTTTGGAAAGAAACCCAAG
Seq A exon
GTGAGTTTAAAAACAAAAAAATAAATGTATTGTTCTTTATTGACTTCTGTTCCATTTTAAGGCTCATTTGTTTAGAATAGGTGATGCAATAAAAGCCCACATGACCACCAGTCTGTCTAGGTAGAACTTTAACTTCTGCTTTCAGACCTGTGCTGTTAGTACCTACAAACTTTGTCATTTTCATGTTTTTTTTTGTTTTGTTTTAAATAGCATAAGTTCCTGTTTATCCTTCCCTAGAAAGTAGTTTTTGTTTTGAACCCTTCATTTAAACGATGTAATGAAATTTAAGCTAGCTAGACTAGAATCATCTAAGCAGCTAGTTGAGCGATCAAAGTTTAGCATGTCCATTTATTTGTTTATTAGTTCACCATAAATCCTTGTTGTCACAGCTTCCCCCATCCATCCCACCTCCTTCCCGCCCGAGTTTTCCCTCTAGCCATTTCCAGACTCCTAAATTTCCTTCAGAGCGGAAAGCTAACCATCTATCTGAAATGAGAAATGCAAAATCTAAGATCACGACCTTCCGAGCTGTGAGAAGAGGGGTAAGAGTCGGCCTGGCATGTGTGGGTTTGCTGTGATTTCGACATTAGCTTACGCTAACGCTTGGGCCAGTTTCTCTCACCCATGGTTTAGCTAATTCCTGCTTGTAAGGAAAGCAGTAAATCTTGATCCTGATGTGTGTGAAGGGATATAGCTTTATCTGGGTCCAAAGAGCTGTGCCCCTGGTTTTAACTCTGGGTTTAAAATGAAGGTTTGATTTGTTGCATAAAGCAGCAGAACATGGTGGAGGGAAGTTTTGGGTGGGTGTGTGTTTTTTTTTTTTGTTGTTTTTTTTTTCTTTGGTTTGTTTTTGTCCTTTGTGTTTCTACATGTATTTCTATATCTTTTTTCACACTGACAGTGATTTTAATCATTGGTACTCAAAAATCAAATGCACAAGTTTGCATTGGAGTTGCTTTTTTGCTTTAATGCCTCATCTCTCAACTAGGCCTGTCACAACAATCAATATATCGACTAATCATGGAGATAACAAATCAATTTAAAACCATTCTACAATTACATTTTTGTTCTACCTAAACGGTGGCAAAGTTTACACTTGGCCATTTACCTTATAGGAAAAATGATAGTGTATATGTAATAGGACATTTACCTTTTCAACATCAAATTATGGAATCTAAATAACCTTAATAATGATATGTATTTTAAAGTGTTTGTGGCTATTTGCATCATTATGCTGTTATATAAAGCAACTCCATGTATTTAGGCATTTAGACATGGTCAAGATGATCTGCTGCAGTTCAAACCAAGCATCAGAAGAGTGTAAGAAAGGTGATTTAGGTGACTTTAAATGTGGCACGGTTGTTGATACTAGACGGGCTGGTCTAAGTGTTTCAGAAACTGCGGATCTACTGGGATTTTCACGCACTACCATCTCTAGGGTTTACAGAGAATGGTCTGAAAAAGAGAAAATATCCAGTGAGCGGCAGTTCTGTGGGCGCAAATGCCTTGTTGATGCCAGAGGTCAGAGAGGAATGGCCAGACTGATTTGAGCTGATAAAAAGGCAACAATAACTCAAATAACTCGTTACAGCCAAGGTATGCGGGATAATGCGCCATGACATAAAGCATGAATCATCTCAGACTGGTTTCTTGAACATGACAATGAGTTCACTGTACTCAAATGGCCTCCACAATCACCAGATCTCAATCCGATAGAGAACCTTTGGGATGTGGTGGAACGGGAGATTTGCATCATGGATGTGCAGCCGACAAATCTGCAGCAACTGCATGATGCTATCATGTCAATATGGACCAAAAAGTCTGAAGAACATTTCCAGTACCTTGTTGAATTATGCCACAAAGGATTAAGGCAGTTCTAAAGGCAAAAGGTGGACCAACCCTGTACTAGTTAGGTGTACCTAATAAAGTGGCTGGTGAGTGTATATCGCACGACAAAAAATCCTTATTGTGACAGGTCTACTCAACTGATATGGATTGTGCTTGTTTCTCTCATTGCAAAATAAATGACTTTTAGTTATTTTGACACTTGAAATCACTGTCATTGTGAATGCACCGTAACAGAATATTTCATCCAAAACTGCAGATTTACTGTTAATTTACTTCCTAATATTGTGGGCGATTATTTTCGGTAGAGCAATAAAAGTCCTTGGTGATTCTGAAAATTCAAGTCAATGATAACCGGCACTTTGAGAATTTAAAAAAAAAATTTTTTTTTTTTTGCTTAAGGTGTTTGTGAAAGGTAATAATGTTGTAAATAATTTATAGTTTCTTACACAGGCACTAGACCTTAATGTATCATCTGGAGCCACTGGTATTATCTTTCTTTTGCATAGTTATGCTTTTTTTTACTCTCAATCTACCAGTAAACATTGACTTGCAGTTTATGAACCTCCAAGAACCACCGTTTAAGCTATAAATCTTCTTTAATGTTCTGCTGAAGAAAAAAAAGTCACCTATATCTTGGATGCATTGAGTGTGAGTAAATCAATTGCAGATTTTGGGTGAACTCTCCCTTTAAACACACTTGAGAATGGAGATGCGGTAATTCATTTACAAACATCGTCTGGATATACATTGAGTTTAGTCTAGGAGATTCACTGTTTTGAATAATTCCTCTTTGAAAACCTTTTGAATACTGAACAAAGTGTTTTGGATAAAAGCCAAACCAATTTTGTTTACCAGAAATGTTTAAGATCCAGCTGTAAATCTCTTTGTAGAAAAAAGTAATTTCAGTTATATCCAAAGAGACTTTTCTAAACAACAGAGGGAAAAAGGACATTCATGTAGAGTTTGGTGAGGTGTTTTTTTGACTATTAACAATCTGAAATCTTACAAGTTTCCTCAACATTTTCTTAATTTAGACCCACTGAATGTTTGCAGATTTGTCAAGTTGCTAGAAGCATGTTGTATGGATATATTTATTAAATCATGTGTTGTGTTTAAAGCTCTAACTTTGACAAATGCCATAATAATGGATCATTCTTTTACTAATAGTTCATAAGGACAGTTCACCCAAAACGTCAAATTGACTTTTTTTCCCAATGTTTTTTTAAACCTTTTTTTTTTTTTTTTTGTTGAACACAAAAAATGCTTTTATTGGAGAATGTTACAAACTATTAGCCATTTACACCAATATTAGCAGAATACTATGGAAGTTAATGGCTACTACAAAGTTTTGGGTGAACTATCCATCACTGATTTGAAAACCATGTTAAGGTTTACTTCTGTAAAACCAAATGCCACGGTATTACCTGTTCCTCTTTTAGCTTCTACTTTATTGCCTTACTTTGTCTATGTTATTATATACTCTCATGATCTGAGCTAAAACTACAATAAGTCAAGTTTCAGCGTAGGCCTGCCATTCTGTGGCTAAAATCATCAGCCAAAAGACATTCACTTGACTGGTGTTGATGAGCGATTTGTTGTCTTTGTTCTTGCTGAATTGGCGTGACCTAACCTTAACCTCTCAGTGGTCTTTAAAGCTGGTAAGTGTAGTGTGTTTTGGACTGCTGTACTCTAGATATAAGGTTTGAGAATAGACTTTGTGTTTAGTTGTAGTATTCAGCCATAAAACCCCTTTACTCCTCTTGTCGTTCAGCTTCAAGATGTCTTTCTTACAGTGCGGCTTAAAGTTTATAAACTATCGTCTGAATTCCAGAATTGGAATGTATGCAAACATAAGGGCTCAGCGTTAAACTGTAGGAAAGACATCTCTCTTAAGAGTGACTGTTTATATAATGTGTGCTCAGACTGTGCCGGGATGTTTGTCAGTGCATCTTTGCCTCCAACCAATAACCTGTGTTTGTACAG
Seq C2 exon
GCGCCAACACTAGAGGATCTCAGCCACCTTCCCCCTGAACAGAGACGCAAAAAACTACAACAGCGGATCGATGAGCTGAATAAAGAACTGCAGAAGGAACAGGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020131:ENSDART00000045038:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.691 A=NA C2=0.959
Domain overlap (PFAM):
C1:
PF039618=DUF342=PU(3.4=5.9)
A:
NA
C2:
PF039618=DUF342=FE(30.8=100),PF143891=Lzipper-MIP1=PU(34.5=78.4),PF0218511=HR1=PU(25.0=43.2)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]