RnoINT0167752 @ rn6
Intron Retention
Gene
ENSRNOG00000001341 | Zfp113
Description
zinc finger protein 3 [Source:RGD Symbol;Acc:6489147]
Coordinates
chr12:19288889-19291862:-
Coord C1 exon
chr12:19291736-19291862
Coord A exon
chr12:19289927-19291735
Coord C2 exon
chr12:19288889-19289926
Length
1809 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTTTTCTTAAATTGTGCTAGATG
3' ss Score
7.53
Exon sequences
Seq C1 exon
GAGTTGGTGACATTTGAGGATGTAGCTGTGTACTTCATCTGGAAAGAGTGGAAGCGTTTGGAGCCTGCACAGAGGGACCTCTACAGGGATGTGATGCTAGAGAACTATGGGAATGTGTTCTCACTGG
Seq A exon
GTAAGGACATGTGCTTCTCAACAGAGTATGCTATCTCTTGCCTTCAGGGTTGGCTAGTGACAATGTAGTCTTAGAAAACTCTAATGCTGCCAGAGAGATGGCACTTTCTGCTCTTGCAGAAGATCCAAGTTCAGGTTCTATTATCCACATGGAGGCTCAAAATTGTAACTCCATTTCGGGTTATCTGAAGCCATCTTCTGGGCTTCCAAGGGCAGTAAACACACACTTGGTGCATGTATACATACATACATACATACATACATACATACATACATACATAGAATCATACACATTAAAAAATAAATTTAATTTTAAAAAGTAGTAATAGTAAGAATAACTCACATTTATAGGGTGATTTGTAGTGTATCAGGTTTCACAGGTACCTTGCAATAATCCTCACAGTAACGCCATAGTTGGGGCGGTTAGTATTATCCTCATTTGATAGGCATGGAGTATAAGGTCAAGGTTTGCAGAAGCAGGCCTGGAGAGATGGCTCAGTAGTTAGGAGCCCTAGCTGTGCTTCCGGGGTCTGTGTCTGATTCCCTGCAACCACATGACAGCTCACAACCTTCTGTCGCCCCAGTTCCTAGGAACCTGATGCTCTCTTCTGGCCTCCACAGATACCAAACATGCATGTGATACACATACATACATGAAGGCAGAACACTTATATATGAAAGAACAAAAAGACTGTTAGACACATAAACTTGTAATCTCAGCACTTGAGAAGTAGAGGCAGGTGGGCCAGCTGATAACAGTTCATACATAATGGCTTTGAGACCACCCTGGGCTACATGAGACCCTGCGTCAGACAAACAATGAACTTAGATACTTCTTGATTGGTGATAGAGCTGGTGAATAACAAAGCTTGAGCTTCAGGGTATTTTCTTGTTATTTATGTCTATGTACTCGTGCACATGTATATCCATTTATTTGAAACAGGGTTTTACACTGCACCCGAGGCTGGCCTGGAAGTTACTAAGTAGCCCAGCATGGCTTTAAATTGTGTGATCCTTCCACATCAGCCACTCTGGTGCTGGGTGTGAGCCGCTACATCTGGCTGAGCCCTATCCTGTTAACACCAAACCTGGTGCTTTAGCCCTGGGTTCTCACACTTACCGCATCACGAATAGACTTCTAAATAATGAGTGTGCTGGGATTCTGAGCACGTGAGGTAGTGCTCCATGTCTAAGTGAACATTGTAGAGCTTTCTATCCTCTTTTTCCTGTTAGAGTACTCCAAGGAGTAATCTACTCTTTTGTTTAAGGGCTTATGCAGCCCTTGTAGAAATTTATTGTTTTAGTGCTGGGAATCAAACCTGGGTCCTCTGCAAAGGCAACAAGTACTCTTAACCTTTAAGCCCAACTCTTTTTTTTTTCTTTTTCTTTTCTTTTCTTTTTTTTCGGAGCTGGGGACCAAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTAAGCCCAACCCTTTAGCTTCTCTTACTTAATTTTTATTCCCAACAAAGCAGGGCATCTCCTCCCACCCCCCGCATGTCCTTGATTTCCTCTAGGTTCACGTCTTTTCTTGCCGACTTTGTTTTCCCCCTTATCCCTTCTGGTCTTTAGCCTGTTTGTCTTAACTTTGCTTTAGTTATACATACAAGTTGAAGGGCCTCTCTTCAGGCCAGTAAAAGGGCGTGTACTTTGGGCACTATAAATGTCAGATACATGATTATCGTCCTCAGACTTGTATTCACTTTCTCACAAAAAACATGACACTTGCATTTTTTTTTCTTAAATTGTGCTAG
Seq C2 exon
ATGGTGATTCCAAAACTGGAAATGATCAAGTAATCTCTGAAGGTATGGGGTCATGTGAGATGATATTGGGACGATTCCAAAAGGATGTTTCTCAGGGTCTTAAGTTTGAAGAAGCCTATGAACAAGAAGTCAGTCTGCAAAGGCAGCTAGGGAGTTCCTCTGTTGGAAGACTGAATAGGAAAATACAAGAGTTTCACCAAGTGAGAGTTGAGAAAAAGCTCACTCATATGGGAGAAAGAAATGAGAAGTACAGTGAGTTTGGGAACAACTTCACTGTGAATTCCAAACTTACTTCACATCAAAGACTTCCCATGGGAGACAGACCCCATAAGTGTGATGAATGTAGCAAGAGTTTTAATCGAACTTCAGACCTTATTCAACATCAGAGAATTCACACTGGAGAAAAACCATATGAATGTAGTGAATGTGGAAAGGCCTTCAGCCAGAGCGCACATCTTATTCAGCACCAGAGAATCCACACTGGAGAGAAACCCTATGAATGTAAAGATTGTGGGAAGACCTTCAGTTGTAGCTCTGCTCTCATTCTACATCAGAGAATTCACACTGGGGAGAAACCTTACGAATGTAACGAATGTGGGAAAACATTTAGCTGGAGCTCCACTCTTACTCATCATCAGAGAATCCACACTGGTGAGAAGCCCTATGCTTGCAACGAATGTGGGAAGGCCTTTAGTAGGAGTTCCACCCTTATTCATCATCAGAGAATCCACACTGGAGAAAAACCCTATGAATGTAATGAGTGCGGCAAAGCTTTCAGCCAGAGCTCACACCTCTATCAGCACCAGAGAATCCACACTGGAGAGAAGCCCTATGAATGTATGGAATGTGGAGGGAAGTTCACCTACAGTTCCGGCCTTATTCAGCACCAGAGAATCCACACAGGGGAGAATCCCTATGAATGTAGCGAGTGTGGGAAGGCCTTCAGGTATAGCTCAGCTCTTGTTCGCCATCAGAGGATTCACACTGGAGAGAAGCCTTTGAATGTAATGGGCGAAAAGCAAAAATTCAGAGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001341:ENSRNOT00000001815:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.098
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=7.2),PF097235=Zn-ribbon_8=WD(100=12.7),PF134651=zf-H2C2_2=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=7.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGTGGAAGCGTTTGGAGC
R:
TGAAGTTGTTCCCAAACTCACTGT
Band lengths:
357-2166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]