RnoINT0168207 @ rn6
Intron Retention
Gene
ENSRNOG00000015271 | Zfp418
Description
zinc finger protein 418 [Source:RGD Symbol;Acc:1311663]
Coordinates
chr1:69615434-69618901:+
Coord C1 exon
chr1:69615434-69615629
Coord A exon
chr1:69615630-69618774
Coord C2 exon
chr1:69618775-69618901
Length
3145 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACTTGACTTCATCATAACAGGGC
3' ss Score
6.1
Exon sequences
Seq C1 exon
TCCTGTCTTTGGTTTAACTTCCCATGGGTTGGTATTTGGAGGATTCTGAGCTTTAGGATCGCCAAATTATACTCAAGTTAAGAGAGAGAGCCGGCGCAGGATGAAGGCCAAGAAGACCGTAGGCAGCAGCGGTAGCTGTGTCCGGGCCCCTGCGTTGTCAACAGAGCCGATGGCGGCTGTGAAGCACCTGGCTCAG
Seq A exon
GTGAGTGCTGCATGCTAGGCGCTCCCCGCCCTAAACATTTGAGTCCCAGAGCCCATTGGAAGACTTAGTTCCTGCATCCAGAACAGTGCCAAGCCCGTGGATGGCGTCCGCATTTCTCATAACTAGTGTGATGAAGCATGGAAGGAGGAGACCAGGAGGAAAGTGCTTAATTGATTTGTGTGGGCAATATCACGTTTGGCCACTTGAACAGGGAGCATTCTAGCCTAAAAATGGCAAGGTGATGGATGTGTATTAGCTATGTCTTCACTACCTAGAAGCCAGCGAGACTGAATGGAAGATCAATGTGGCCAGAGGCTATTCAAAATGTCCCAATAGCTGCACAGAGTTAGAGCTGGCTGGAAGAGAATAAAACGAAGCCTCGGGAGAGTTAAGCTTTGTACAACATCCCACAGCCGATATGACTCAGCATTATGCACTAAGGTTTTGAGATCATTTAGATATATAAAGGTCATGAAGATCCGGGACTGGACACGGGTCACAGGGAGGCCGAGCCCATGAAATCCTACCATGGTCCTTGAGTCTTACAACTTTCTTCCCACAGATTCCCAGATGTACAGAAACGGGTATGATCTGTACACAGGTGAGTGTGGAGTGTTCTAGGAAGCTCACCAGTGTGGCCACACTTATTGCCTTGTGTTGGTAGTAGAATTCATTTTTTGTGGAGGTTTTTAAGAGTAGAATGTAAAATTTAGCATGGAGGCATACCTTGATAGTCTTAACACTTGAGAGGCAAGTTCAAAGCCAGCCTGGGGTACATGGTGAGAAACTAAGAAAGGATGAGTAATTGATAAGATAGCTCAGCTGGTAAAGGTACTTATTACCAAGCCTGAGGACCTAAGTCAATTACCAGAACCTACATGGTAAAAGGAGAGAACTGATTCCTGAAAATTGTCCCCTGATTTCTACTTGTACACCTACATACATACACATACACAAACTGAGAGAAAATACATACATACATGCATACATACAAAAAAAACAAGGGAGGCTAAGATTTCAAAACCCAGTAGAGGGAATTCAGCTGCTGACTAGTAACACAGATCTAAAAGCTCGGGGGAAAATTAAACATAGAGACATTCTGTTTCCCCTTGAGTATGGCTCGATTAGAAAATAGAAACAGGGTTGGGGATTTGGCTCAGTGGTAGAGCGCTTGCCTAGGAAGTGCAAGGCCCTGGGTTCGGTCCCCAGCCCCGAAAAAAGAAAAAAGGAAAATAGAAACAGCTTTATTTTATTATTTTATTTTATTTTTATTCTTCACTTCTTCATGTTCTGAAGGCCAATTTTTAACTCCTCTGATCAGGTGATACTCCTTCCTGCCTCAGCCTCCTAAGTGCTTGTACTATGAGAGTCCGCCATTATGCCCAAAAGGAAGCTGAGCTCAATAGTACTACCATAAGCAGAAAAGTAACGATGGGAGTTATGACTATGTCTAATGACTGGGCATCTAGCTGGAGGTGTAGACATCATTAGCACACCTGAGTGAGTGGAGGAGCCTATAGGGACCTTGCGAAAATATAGCAGATCTGGTAGGTGGCCAAAGCTTCCATAGGAAGTGTGGAACTCAACTTAAGAAAAGAAAAAAAACACTTGGAACCACTAAGGTTACATAACACAGTTGCTAGTATAAGTGTCTGTAAAATGCACACACACACCACCAGCATTTATAAAGGATTCTTGAAGTGTCTAATGAGGGAAGAGTTTCATTCAAAGCAATTGAGAGCTCAAAGGGCGCCAGTGTTCATCTGGAAGGATCAATATATGTGGCAAGGAGAGCTCCTGTAGCTAGACTTTTGGTAGAGTTTTTTAGAGGAAATCTGTGACTGTTGAGGTAGCATTAAATGCCACATGTGTAAAACCAATCTGTCCTCTCCCAAGTTGTGATGGTGGCTGAACAGAGTCAGCCAGCAAGGCATTAAGAAAGGATGGCAGCTGCCTCTGACTCTAGGAAGCTTCAGAAGTTGGGTAGTGATGGATCTTGCCTCCATATATGAAGCTTTCTCTAGATACCTTCTGCTAAGTAATGCAGGAGCCCAAAGAGATGCCTGTGGTATAGACTGTGGAGTTCAAGGTGGCTGTGGGAATAAGCTTTTATAAGAGAGGTAAGGACTAAGAAGAAACACATGGAGATGGAAAATGTTAGCAGGCCCTGCTTGGATGACCATGTCTTGGTTTTAAGGAGGAACCCTAGGAAAATTGACTGACAAAAGTTATGTCAGCTAGACTTTGAGGTCTTTATCTCTGTCAGGTAAAGAATTAAAGACAGGAAAAGAGCTCAGAGTGGACGGAAGTTGATTGAAAAGCTTTCCAAACTCTTCAAGTACATGGAGGGGGACATTCAGAGCAGAGTACCATTATCTCTAAATGTGTTTGGAATTATCTTGTGTTCAGGGTCACACACACACACACACACACACACACACACACACACACACACACACTGTTTTGGTTAACAGACATTTTGTACCCCTTCAACCATTACAATAGGACTCCCTGACCTGGTTTGTGAGCAAAGAAGCAGCTGTAACGGTGTCCCTTGCCTTAGTGCATGAATAACTGTACTGGCTGGGATAAGAGTGGGTACCCCAACTTCTCTCAGTGGTATAACAGGTACAGAAAGACCCACCACATGCAAAGGGAAATGGGCTGTATTTCAAAGGAATCAAAAATTACCACCTGGGGGGTTGGGGATTTAGCTCAGTAGTAGAGTGCTTACCTAGCAAGCACAAGGTCCTGGCTTTGGTCCTCAGCTCCAGGAAAAAAAAAAAAAAAATTACCACCTGTTGCTTACAGCAAAAAGCCACTTTAAAACAAAACAAAACAAAACAAAACAAAAAACCTGTGGTTTTTAATGTTCAATCATCTCATGTCCTAAAGGCCTCTGGTCTCAAAAGAAGTCTTGATGGCCCTATGTTGTCAAGTCCAAAATGCATAGCTATTCCTCATCCTTCTGTGGGTGCAGAGGGAGGACATAGTGATCTGGGAATAGACCGGCAGGTGTTAGCCTCCATGTGTTAAGCTTTTTATCATCTCAAGAGGAGAGTTGGCAAAGGAAGGATATGTGGGTGAGTAAACTGGGACGCCTAAAGGAGGTTGGTCATTGAGTGACTTGACTTCATCATAACAG
Seq C2 exon
GGCTGTGTAACCATTGAGGACGTGACTGTTTACTTCTCCCAGGAAGAGTGGAAGCTCCTGGATGAAGCTCAGAGGCTACTGTATCTTGATGTGATGCTGGAGAATTTTACCCTTATATCCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015271:ENSRNOT00000020751:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]