RnoINT0168267 @ rn6
Intron Retention
Gene
ENSRNOG00000004572 | Zfp472
Description
zinc finger protein 472 [Source:RGD Symbol;Acc:727944]
Coordinates
chr7:15247681-15250411:+
Coord C1 exon
chr7:15247681-15247739
Coord A exon
chr7:15247740-15248588
Coord C2 exon
chr7:15248589-15250411
Length
849 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
ACTCTTTTCATGTTTTGCAGAAC
3' ss Score
10.3
Exon sequences
Seq C1 exon
TTAGGGAAAACAGAAGAAGAAGATAATGAAGAGTACCAAAATCCTAAAGGAAGCCTGAG
Seq A exon
GTAAATTACCCTCAGGAAAAGATTTGCATCCAGTATTTGGTGGTGGTGGTAAACCTGATAATCTTTTGTAAATACACTGGGCTTGATCACTTAGAACTATTGAAAGATCCTAGCAATATAAAGTTAGATAACATTTTCCTGTGGTTCATTATACAACTTCCCTTTGTGCACAAAATTTCAGAATATTAATCATGTCACACTTAGGCTTGACTATAGAACGTGTGTAAGTAAAGTGAATTTGGGGTTTAGATTGAGCTTCAACTTCGCTAAATCACTTAAACAATTATTCATTTATGTCAAATTCCATAATGAGAGCTATTTTGCGTTACAAATGTTCGCCGTATCTGTGACTTGGTGGCATATATAGTTATGTTTGTGAAATGCCTGAAAGTGTTATAGAACCTCATCGATAGTATTCCATTCTCAGGACCCAGTTCAGCATTCAGTGTTAATAATGGTTCTCTCTTTAGACATTTATTCGTGTCTGTGTGCATTGGTGCATGCATGTACACGGTGGTGCACTTGTGGAGGTCGTAGGATAACCCTCCTGAATAGGTTCTCACCCTCTCCCTGCAGACCTCAGGGATCAAGTTGATGTCTTCAAACTTCCCAGCAGGTGCCTTTATCTACTGAACCATCTTACCTCCCCACAGTTTGTACACTGTTATGAGAATTAAGTCAGTACTCTTATTTCCTGCCTCTGGGAAAGGGTCTTTCCGTATGGTACGGTTAGGCATTGCTCCTGCCGCTGCCTCTTAAATAACAACAGTCATGAGGCACAGCACACAGCCTGCAGTGCTTCCTCTGACTAACCATAAAACTACAGACTACTCTTTTCATGTTTTGCAG
Seq C2 exon
AACTCTGATGGTTGAGAGACTCTGTAAATATCATCATGGTAATCAGTATGGAGAAACGCAACGACAGAGTCCAGACCATGTTGTGAGTGAAAAAATGCCTCCAGCCGTAAGTGAATGTGAGAGAGATATCCTTATTCATTTACCCTCAGACATGCACTTCAAAGGTCAAACTGGGGAGAAACCATGCCAGTATCAGGAACAGATGGAGAAGACTTTGAAACATAAGAAATGTTGGAAGGACTTCAGTTATTCCGAGTTGCTTTGGATGCATAAAAACCCTCCCATGAAACAGAAACCCCACGAAAATAAAGAGGCTAACGAAGCTTCTAGGAGTTTCACCTCCGATCACGATTATGAGGGAACTTTCACTGAAGAGAAATCCTACATTTGTAAACAGTGTGGCAAAGCATGGAGTGATTCCTGTAGCCTTCTCTGGCATGAGAGAAGTCACATTCAAGAGAAGCGTCATACATGTAAGCAGTGTGGAAAAGCATTTAGTCGTCCCTCACAGCTTCACAAACATGAGAGAATCCACACTGGTGAGAAACCTTATGTATGCACACATTGTGGAAAAGCCTTCATTGATCGCAGAACCTGTCACAATCATGAGAGGACTCACACTGGAGTGAAACCCTTTGCCTGTAAGCAGTGTGGGAAAGCCTTTCTTCGTTCCTGCCAACTCCTCATTCATGAACGAATTCACACTGGAGAGAGACCTTTTGTATGTAAGCATTGTGGAAAAGCTTTCACCTATTCCAGTGCTTGCTATTATCACGAGAGAATTCACACTGGAGAGAAACCCTGTGTCTGTAAGCAGTGTGGGAAAGCGTTTAAATGTTCTGCATACCTTCACATACATGAACGATCCCACAGTGGAGAAAAACCCTATGTGTGTAAGCATTGTGGCAAAGCCTTTGCTTATGCCACTGGATGCCACAAACATGAAAGAATTCACACCGGAGAGAAACCGTATATGTGTGTGCAGTGTGGGAAACTATTCACTTTCCCCAGATCCCTTCACATACATGAGAGGTCTCACAGTGGAGAAAAACCCTATGTATGTAAGCAGTGTGGGAAGTCTTTCACTCAGGGAACTTCTTTGCGAAGACATGAACGAATTCACACTGGAGAAAAGCCTTATGTATGTAGGCAGTGTGGGAAGGCCTTCATCCAACGTGATGATTGCTACAGTCATGAACGAACTCACACAGGAGAGAAACCATTCATGTGTGTTCAATGTGGGAAAACATTCACTTTTTCCAAATCTCTTCAGATACATGAAAAAAATCACACAGGAGAGAAACCCTATATATGTAAGCAGTGTGGGAAAGCATTTACGTGCTCCACATACCTTCTCAGACATGAAAGAACTCACAGTGAGAAGAAACTCAGTGGGTAATGTTTCTACCAGTGTAAATCATAGGGATGTCTGACGTCAACTTTTATTTTGAGGTATGAAGGAAAACGGAGAGACACTGTAAGATTGTGCGAATTGTAGAAGTATAATTTTGGTCCCCCGTGCTCTCCATAAGATGACAACCTGAACAGCTGGTTCTACTGCTGTGTCTTGTTCCAGCAATGAGAAAGGAAAGGCTAGGGCAGTTACAATATTCAGTGACGCCTATTCTGTTTACAGGGTTTGAACACACCTTGGGAGGTTTATGAACCAGTTTCAAGTAAATAAAATTGTAAATATAAGAAAGTTGTGTTTTTACCAATAAGATAAAATTTATGAAATTATCTCATGTGGCTAAGTCCTATGAAAATACGTGAAGATATTGAAGGTTAATTTGTGTTGAATGTTTCTGAAAATAAACCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004572:ENSRNOT00000006044:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.886 A=NA C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAAACAGAAGAAGAAGATAATGA
R:
GGGTTTCTGTTTCATGGGAGGG
Band lengths:
354-1203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]