RnoINT0168823 @ rn6
Intron Retention
Gene
ENSRNOG00000020416 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:RGD Symbol;Acc:1304737]
Coordinates
chr7:11343847-11344771:-
Coord C1 exon
chr7:11344592-11344771
Coord A exon
chr7:11344034-11344591
Coord C2 exon
chr7:11343847-11344033
Length
558 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TGCTGTGGGGTCCATTGCAGGTC
3' ss Score
8.44
Exon sequences
Seq C1 exon
ACCTATCGGGACCACCTGGAAGGGCAGAAGCACCGGAAGAAGCAGGCAGCTCAGAGGACCCGCACGCAGCCCAGTGGAGGTCCTAGAGGATCCCAGAGCCTTCACTGTGGCCTGTGTGCTGTGTCCTGCACGGGGGCGGACGCCTACGCTGCCCACATGAGGGGAGCCAGGCACCAGAAG
Seq A exon
GTATGAGTGTCCCGGGCCAGCAATCAGTTTCCCACCAGCTCTGAGCAGGTGCAAGGTGGGTGTGGGGTGGCTGAGGACACCACGATGAGGGGGCCATGTTGACTGTGACTGAATATTCTCTGATGTGGCTGGAGACAGAGGTGACCTCAGGTGATGGCCCTGTGGCCAGAGTATGGGCTGCAGCCAGGAGTGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGAGAGAGAGAGAGAGAGAGAACACGCCGGGGTCTCCCAAACCACTCATTCGTGCACAGGTTACAGCAGGCTATGGGTTGGGAACCGGAGAGACAGCTGCCATAGGCAACATTGGTGTGAGTGCTGGAGAGAGAGAGAGAGGAGGTGTCAAGTCTGAGAAATGGGGCCGCAGGCAGGAGGTGGCTCCAGGACATGTTTTTAAGGGGGAGGTTTCTACACAGTATAGAAACCAGGGCACACCACCATTCTCTCCAGCAGCCTGTTCAGTGTGAAGTGCACTGTTTGTTTCCCAAACATGCTGTGGGGTCCATTGCAG
Seq C2 exon
GTCTTCAAGTTGCACACCAGGCTAGGGAAGCCCATTCCCTCTGAGCCCACACCACGGAGTGTCACCTACACCCGAGGTTCGGACAGCACCCCTGAGACCTCAGTCAAGCATGAAGCTCATGCCCGTCACAGCTCACACACCCAAGGCCGGCCAGCACCAGCCAAGGGACCAGCAGCCTCACGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020416:ENSRNOT00000061132:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(40.0=16.7),PF128742=zf-met=WD(100=41.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCGGGACCACCTGGAAGG
R:
TGAGGCTGCTGGTCCCTTG
Band lengths:
358-916
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]