HsaINT0185623 @ hg19
Intron Retention
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:29189]
Coordinates
chr19:3825228-3827651:-
Coord C1 exon
chr19:3827469-3827651
Coord A exon
chr19:3825406-3827468
Coord C2 exon
chr19:3825228-3825405
Length
2063 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
CCCGGCTCTGTCTGTTGCAGGTC
3' ss Score
12.55
Exon sequences
Seq C1 exon
ACCTACCGGGAACATCTGGGAGGGCAGAAGCACAGAAAGAAGGAGGCGGCCCAGAAGACAGGCGTGCAGCCCAACGGGAGCCCGCGCGGGGTGCAGGCGCAGCTGCATTGCGACCTGTGCGCCGTGTCCTGCACCGGGGCGGACGCCTACGCGGCCCACATCCGGGGATCCAAGCACCAGAAG
Seq A exon
GTACGGCCCCGCCCGGCCCAGGCTCTGCCACCCTGGGGAGAAGGCCCCCAGGTCAGCACTTGGGACCCACAGAGGTACCTGGGGAGATCAGAGGGAGCTGGGAGAAGCCTCCCCAAGTGGAGCGCGCCCCAAGGGCCAGCCGCCCAGGCCCATGCGTCCTCATCTTCAAGGATCCAAACTCCTTTCCAGTTATTTTATTTTAGTTTTCATTTTATTATTTTTTTTAATGGGGACAAAGTCTCGTCCTGTTCCCCAGGCTGGGATGCAGGGGCACAATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCATGCCTCAGCCTCCTGAGTAGCTGGGATCACAGGCATCCGCCACCGCACCCGGCTAATTTTTGTGTTTTCAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCCGCCTCAGCCTCCCAAAGTGCCGGGATTACAGGCGTGAGCCACCGTGCGGGGACTCCTTTCCACTTATAAAAAGGGTTCCTGCTCATTGCACAAAAACATGAAGTGGCCGAGACACTCACACCCGGACTTCCAAGAAAGCTTGGCATTCGGGCGTGGTGACAGACAGGGCTTGCCCTGTGATGAGACCCAATGCTGTGTTCCCTTTGAGGTCTTGCTCTTCACACTCCCTGCTGTAGTATCACTGTTCTCCTGAGGCCTTAGTAAGGTCTGGGTCAGGCCGGGCGTGGTGCCTCACGCCTGTAATCCCGGCACTTTGGGAGGCCGAGGCGAGTGGATCGCATGAGGTTGGGAGCCTGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTGAAAAATACAAAAATTAGCCGGGCGTGGTGGGTGCGTGCCTGTAATCTCAGCTACTCAGGAGGCTAAGGCAGGAGAATTGCTTGAACCCGGTAGGTGGAGGTTGCAGTGAGCTGAGATCTCGCCACCGCACTCCAGCCTGGGCGACAGAGCAAGGCTCTGTCGCCAAAAGAAAAAAAAAAGAGGCCTGGGTTTCGTCATGTTCGGCGGGGAGGGGATGGAGTCCCCACCTGAGAGCAGGGAGGGGACAGCTGGCTTGTGCTGTAGCCCGGGCTGTCAGGCTGAGCCACCCTGAGAGGCCTGGCTGAGGACCTGGCTTCTCTCCCCCAGCTGCCTGGAGGCTCATCCAGGGCCTCATTCCCTGGCTCGGCTCAGGACAGCTTGCTGAGGGCCCGTGTGAACCCACAGGGGAAAGAGGAATGAGCAGGGAGGCATGGAGGAGGGAAGGAGCGGGGCAGAGAAACGGGGGAAGGAGACTTGGCCTGGGGACCGGAGAGCTAGGGGCCGGTGGGGCAGAGCTGCAGGTGTCACCCCCACAGGCTGGGGCTCAGTCTGGGGGTCAGGCAGGCCCTGCTGCCCGTTGTGGGGTTGGGGGGTACAGGGCAGGTCTTGTACCAGGGTACAGCGTGTCAGAGACAGAGCTGGGAAGTGTGTCTGAGATGGTCCCCAGCACACACACAGTGGCCCTGTGCACACGGAACCTTTGCCAGAAACACCTTGTACCTAGAGGTGCTGAGAATGGGGCACGGCCAGAATACGGACGTGACCATGTGCACACGTGCGTGCAGAACGTGGGTGTCCGTCCAGGGACACGTGCACACCCACCATCCATCCACACATGCTGAGTCCCGGGCAGTCAGGGAGCACTAGGCTGGGGCTTGGGAGGCTGAGAAACGGCCCCACCTGGCAGCCCACGTGGTGGAGGAGGAGGAAGAGCGTCCGTGTGAGCCGGTGAGCCACGTGCTCACACACTAGAGGAGTGTCACCGTGCTAGAGAAGTCACAAGCACGTGTGCAAGGCAGGAGGCCACCTGGGAAGGGCCTTCTGGAGTGGGTGTTATCCAGAGAGCAGGAGGAGAGAAGAGAGGGGGGTCCCTGGGACCGGCCAGCCCACACTCGCGCTGCACGCCCGTGGAGGCCCTTCCTGCCTCTTGAAAAAGGCCATCAGGCTGGGAGCGGCCCTCACGCGGGAGCCCGGCTCTGTCTGTTGCAG
Seq C2 exon
GTCTTCAAGCTGCACGCCAAACTGGGGAAGCCCATTCCCACCCTCGAGCCTGCACTGGCCACAGAGAGCCCCCCCGGGGCAGAGGCCAAGCCCACGTCCCCCACTGGCCCCAGCGTGTGTGCCTCGAGCAGGCCAGCGCTGGCCAAGAGACCCGTGGCCTCGAAGGCCTTATGCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-ZFR2:NM_015174:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.612 A=NA C2=0.883
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(40.0=16.4),PF128742=zf-met=WD(100=41.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)