BtaINT0164451 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000755 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr7:21386173-21388331:+
Coord C1 exon
chr7:21386173-21386358
Coord A exon
chr7:21386359-21388060
Coord C2 exon
chr7:21388061-21388331
Length
1702 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
ATGGGGCTGGTCTGTTCCAGGTC
3' ss Score
8.43
Exon sequences
Seq C1 exon
CAGACGTACCGCGAGCACCTGGAAGGGCAGAAGCACAAGAAGAAAGAGGCAGCCCAGAAGATGGGCGTCCAGCCCAACGGCAGCCCGCGGGGGGTGCAGGCGCAGCTGCGCTGCGACCTCTGTGCCGTGTCCTGCACCGGGGCAGAGGCCTACGCTGCCCACATCCGGGGGGCCAAGCACCAGAAG
Seq A exon
GTAGGACCCTGCATGGAGCCAGGCCCACTCGGGACCCAGAGGGGCGTCTGCTGACATGGGGGGCACGGAGACAGCAATCCGCCAAAGGCAGCTCTCCCCTCAGGCCCATGTGTCTTCCTTCCTCAGAAAGCAGCCCCTCCTCCCAGTTACAAGAGTCACACCTGCCCCTGGACAGAGGCATTGAGCCGGACCCCATGCCCGGCCCAAGAGGAGACTGTTCCGGGCCCTCGGGGTGTCTTGTGTGTTTATGCGGACCAGAGTCTGTATGTTGATGAGATCCAATGGTATAGTCCATTTGGGGGTCCTTATTTATTTAAAAATCAAATTAAAGTAGTAAGTTTTCATATTTGAACATCTGAGATTTAACTGACACTGTTTAGTATTAGCACTTGTCATATTTATTACTATTTTAGTAGCAGCGTTTTCTTATGGCCTTAGAAATGCTTGTAGTATGTCATCTTATGGGGAAGTGAACAGGGTCCCCCACCTGAGAAGAGGTAGGTTTCCCCTCCCTGGGCCCTCTTTTTTTGGCCCAGAGGTGGTTTTTGGAAATCAGCAAATCCCCCCAGACAGTGTCATGAACCTGGTAGGTGATGCTCGCCTTCTGGGTGTGCGTTGAGGGCAGGAGGGGGCGATTCCTGGCAGGAGGCCTGCTTGGTGCTGCCCTGTGTGGTTTAGAGTGAGAAGGTTGGGAAGGCCCCTGCCCTGTCCACAGAATCCCCTCCAGCCGCCCCAGCCCACCTGTCGGGCTCCCTCCTGCCCCAGGGCCTTTCCTTGAACCACCACCCGCCCCCCCACACCGTGGCCTTGCCAGCCCTTCCCCAGCCCCCTCTGCAGGTCGGGCCACCCTGAGCGCCCGTCCTGTCCTCTGCCCCAGCTCACCACAGGCCTCGTCCCCCAGCCCAGCTGGGACAGGCTCTCAAATACCTGAGTGAACCCACAAACCCCACAGAGGAAGGAACAGGGGAGTGTGGAGAAGGGGCCCTGACCTGATGGTCACAGGTGTGCAAGGGGAGAGCTGGAGCCCAGGTGGGGTGGGCTGCGGGTGTCACAGCTCAGTTTGCAGGCTGGGACTTGCTTCTGGGGACAGGAAGCCCTGCAGGAAGCCCTGGGGTATGGGGGTGGGGAGGCAGGTTTGAGCTGTGAGCGTCAGAGACTTGGAGCCCGTGAATGTGTCTGAGACGGTCGTCAGTGCAGATTGTCCTTGCCAAGTGGAGCTTCAGCACTTAAATGCCTTGGAGGAGGTCAGGCCAAGGAGGGGCTATGACTGTGTCCTCGGTGATCCGTATCTCTGGATGTGTGTATGAGTTCCCCCAGAGCGTGGACCTGTGCTGTGGGCGTGCACACGCGTACCTCGGAGCACCCGGCCCCCTCAGCGCATTCACCCACATGTGCTGTGGGGCTGGCCCTGGGCTGGTGCTGGGAGTGCAGAAACCAGCACAGGTGTGGAGTGTGGAGTTTGGGGTTGTGTTGAGGTCCCACCTGTGTATGACTGGTGGGTACCTCCTAGCAGGAGACAGCTTGGGAAGGCCCTCCCTGGGACATTTAAGGGGGGCTGGGGAGGAGGCGGTCTCCCAGGGAGACCAGGATAGACCCCCCTCACTTGCACAGGCTGCCAGCTCCCACCACCGTGAGCTGCTCTGCTCGCCCCTGAGGAGGTTGGTCGGGTGGGAGGGGCCCTGATGGGGCTGGTCTGTTCCAG
Seq C2 exon
GTCTTCAAGCTGCACACCAAACTGGGGAAGCCCATCCCCACCATAGACCCTGCGCCGGCCGACCCCGGCTTGGCCCAGGCCCCCAGCACCAGCCAGCCGGCCTCCATCCCCGTCACCGTCACCGCAGAGAGCGCCCCCGCAGCCTCAGCCAAGCCCGCGGCCCCCGCCAGCCCCAGCGTGTGTGCCCCGAGCAGGCCACCACCGCCCAGGAGACCGGCCACCTCGAAGGCCTCGCGTGTGGGTACGGCTCTGCGCCTCACAGCCACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000755:ENSBTAT00000001004:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=NA C2=0.978
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(42.3=17.7),PF128742=zf-met=WD(100=40.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGGCAGCCCAGAAGATG
R:
GTCTCCTGGGCGGTGGTG
Band lengths:
358-2060
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]