DreINT0177958 @ danRer10
Intron Retention
Gene
ENSDARG00000071683 | zfr2
Description
zinc finger RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-184]
Coordinates
chr22:4697008-4699803:-
Coord C1 exon
chr22:4699621-4699803
Coord A exon
chr22:4697240-4699620
Coord C2 exon
chr22:4697008-4697239
Length
2381 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
TGTGAAATCTTTTTACGCAGGTG
3' ss Score
7.38
Exon sequences
Seq C1 exon
ACTTATCGGGAACATCTGGAAGGGCAGAAGCACAAGAAGAAAGAGGCGGCTCAGAAGAGCGGCAGTCAGGTGACCAATGGCCCCCGTGGCGTCCAGACACAGTTGCGCTGTGAACTGTGCGACGTCTCGTGCACCGGCGCCGACGCTTACGCTGCGCACATTCGCGGATCCAAACACCAAAAG
Seq A exon
GTTTGTTTAATGTTTCATTTCAACACTCTTCATCTTTTCAACATGTTTTTGTATTGCAGCTTCTTTTTTTAAGTGTTGTCAATTATTTAGTTGAAATTAGGGCCGGACAATATATCAAAATAATCACAAATGTAGGAAATATTGCATGATTGAAGAATCTGAGCATTTGTATATGCAACAATAGAAGTACAAAATACACATGCAAATATTAATCAAAACATATTTCATTAGCATATTCTTATAATCTGTAGACATTTTGTGAAATACGAAAAAAAAGATTTTGTTATAATACGGTGGGAAATTACACATACTGTAAGTGTTGTAGTAATGTTTATTTTAATAAGAATTATTTGACAATTTTTTGATAATTAAACAAATTCTGTACTTTTTATTGTGAACATTTTTTAATTATTTTAGTATATGCTGTATTTTGCTAAATTTAGGGCTAGATAATAAATCAAAATTATCAAAATTTTGCAAATGTTTTTTTTTCCAGAAAAACTAAAACAGATAAAGTTATAATAACATGGTTTAAAATGATATTGTTAGTGTTGTTGTAATGATTATTTAATTCTTTAAATAATTTTGTATTAGTTTTAAGTAGTTCTGGATTTTTTTTATTGTTAAAAGAATAAAAATGTTTTTTTGTTTGTGCTGTATCTTGCTGAAATTAGGGCTGAACAATTAATCAAAGTTATCAAGATATTGCAAATGTGCCTAAAAAAAACAAGTTTTATTATAATAAGTTATAATGAGGTGAGACTTTACACGTATTATTAGTGTTGTAGTAGGCCTAAGGTTTATTTTAGTAATGATTTTTTAAAACATTTTAAAATAATTTGTGATTAATTTTAAATCTGTATTTTTTATTGTGAAATAAAAAGACTTTTTTTTGTATATGATGTGTTGTGCTGAAATTAGGGCTGGACAATAATTGAAATTGAAAACTTAAATTATCGAAATATCGCAAATGTGCCTATCAAACAAGATGACAAAACATTTATGTAAAAATTGAACAAAAAATTGCACGACAAAACAACACATACAAATATTAATCAAAACATATTTTTTAAGCATATGCTTATATTTTGTGTAATTTTTGTGAAATAGGAAAAAAGAGCTAATGTTAGTTGTAATATGGTTGAAAATAGCATGTTTTGTTAGTGTTGTAGTAATGTTTAATTTAATAATTCATTTTTTAAAATTATTAATTTAAATCATTCAGATTTTTTTATTCTGAAAAATTAAATATATTTATACCGTTAAAGTCAGAATTATTAGCCCCTCTTTGAGTTTTTTTTCTTTCTTTTTTAAATATTTCCCAAATGATGTTTAACAGAGCAAGGAAATTTTCACAGTATGTCTGATAATATTTTTTCTTCTGGAGAAAGTCTTATTTGTTTTATTTCGGCAAGAATAAAAGCAGTTTTTAATTTTTTAAATGCCATTTTAAGGACAAAATTATTAAGCCCTTTAAGCTAAATTTTTCCCTGATAATCTACAGAACAAACCACCATTATACAATAACTTGCCTAATTACCCTAACCTGCATAGTTACCCTAATTAACCCAGTTTAGCCTTTAAATGTCACTTGTAAATTTAAGCGTTATAGAAGTGTCTTAAAAATTATCCTGCCAATATCATGGCAAAAAAAAAATAAATCAGGTATTAGAGATGAGTTATTAAAACTATTATGTTTAGAAATATGTTGAGAAAAATCTCTTTTTAAATTTAAATAGAAATTTAGGAAAAAAATAAACATGGGGTCTAATAATTTAAAGGGTCTAATAATTCTGACTTCAACTATATGTGTGTGTGGAGTGCGTGTGTGCGTGTATATGTGTATATATATGTATGTGTGTGTGTGTATATATATATATATATATGTGTGTGTATATATATATGTGTGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATATAAATATATATATAAATATAAATATATATATAAATATATATATATATATAAATATATAAATATATATATATATATATATATATATATATATATATAAATATAAATAATTTTATTATTTTTATTATATATTTTTTTTATTAATTTATTTTTGTATATGATGTGGATTACAGAAAATTGAAGTTGGTGCAAATCTAGTTGTACATTTTTTGTTATTTATTTCTTTTGTATATATTTACTTTTAAATGTAACACATTTCAGTTGTCGCATTATTTATCAGGCTTTTGCACATCAAATTTTGCATCAATGTCGCACCGCACTAGTTGAAATGCACCTCTGTGAAATCTTTTTACGCAG
Seq C2 exon
GTGGTGAAGCTGCACACCAAGCTTGGCAAACCCATCCCTTCCACGGAGCCGGTTTTAGTGAGCTCCACTCCTGCTGCAATGACGACAACCACTAGTAAACCAGCGGCGTCGACTTCTTCCACTCCTACATCAGCAGCGCAGAAGATCCAGACAGCGGCTCCACCCAAACCTGCGGCAGCACCTGTCAAAAAACCACCGCCTGCTGTTTCTGCTGCTAAAGCTCCTGCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071683:ENSDART00000122341:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(44.0=17.7),PF128742=zf-met=WD(100=40.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]