MmuINT0180115 @ mm9
Intron Retention
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:80704740-80705701:+
Coord C1 exon
chr10:80704740-80704919
Coord A exon
chr10:80704920-80705514
Coord C2 exon
chr10:80705515-80705701
Length
595 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
TGCTGTGGGGTCCGTTGCAGGTC
3' ss Score
8.21
Exon sequences
Seq C1 exon
ACCTATCGGGATCACCTGGAAGGGCAGAAGCACCGGAAGAAGCAGGCGGCTCAGAGGACCAGCACACAGCCCAGTGGAGGTCCCAGAGGATCCCAGAGCCTCCACTGTGGCCTGTGCGCCGTGTCCTGCACGGGGGCTGACGCCTATGCTGCGCACATGAGGGGAGCCAGGCACCAGAAG
Seq A exon
GTACACATATCCTGGCCCAGCAGTCAGCTCCAGCAGCTGGTGTCTCACCAGCTCTGAGCAGGTGCAAGGTGGGGGTGGGAGAGGGCACCACGGTGGGGGCCATGTTGACTGTGACTGAGCATGCTCTGATGTGGCTGGAGGTGGAGGAGACCTCAGGTGATGGCCAGAGTATGGCTGCAGGCAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGAGAGCGAGAAGAGAAGAGAAAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAAGAGAGAGCTGGGGTCCCCCAAACCACACATCCATGCACATCTGCTCACAGGCTTGGGAGCCAGAGACATTGCTATACAGGTCAAGAACGTTGGTGTGAGTGCTGGAGAGAGACAGGGGTGTCAAATCTGAGAAATGGGGCCACAGGCAGGAGGTGGCTCCAGGACATTTTTTTCAAGGGGGAGGTTTCCACAGAGTAGAGAAACCAGGGCACCCTGCCACACTTTCTCCAGCAGCCTGTTCAGTGTGACGTGCACTGTTTGTTTCCCAAACATGCTGTGGGGTCCGTTGCAG
Seq C2 exon
GTCTTCAAGTTGCACACCAGGCTAGGGAAGCCCATTCCCTCTGAGCCCACACCACGGAGTGTCACCTACACCCGAGGTTCGGACAGCACCCCCGAGACCTCAGTCAAGCATGAAGCTCATGCCCGTCACAGCTCACACACCCAAGGCCGGCCAGCACCAGCCAAGGGATCAGCAGCCTCACGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949-Zfr2:NM_001034895:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(40.0=16.7),PF128742=zf-met=WD(100=41.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCGGGATCACCTGGAAGGG
R:
GTGAGGCTGCTGATCCCTTG
Band lengths:
358-953
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: