RnoINT0169106 @ rn6
Intron Retention
Gene
ENSRNOG00000013855 | Zmym1
Description
zinc finger MYM-type containing 1 [Source:RGD Symbol;Acc:1307027]
Coordinates
chr5:145114361-145118806:-
Coord C1 exon
chr5:145118572-145118806
Coord A exon
chr5:145114536-145118571
Coord C2 exon
chr5:145114361-145114535
Length
4036 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
CATTTATTGTTTGTTTTTAGAGA
3' ss Score
8.92
Exon sequences
Seq C1 exon
CTCCACAGCCGACATCTCTGTTCTCACCTGACGTGAGTAAAATGCTTCCTGCAGTTCCAGGCACAGCTGCTCAGCTTTCCTGTTCCAGTTGTAGAAGAGTCTTTCAGGAGGGACAGACAGCTTTTCAGAGGAAAGGGTCTGCTGAGCTTTTCTGCTCGAGACTCTGCATCGATGGGTGCCCTTTACCTGCTATGTCCCCAGCTCCTCTCAAAAGAATGTGCTTAAACTGCTCAAG
Seq A exon
GTACGGAAGGCAAAGCAAGGCCTTTTATTTTGCTGCAAAGATCTTGCTCAGCGTTTTGGTTATAATTGTATGTGTTTCGCCTTCTCTGAGGATGGGAAACCGTGGGTAAATGAAAAGAATTTGCTTCTGCTTCAGTTCCTTTAAGATCACTCAGAAGTAGTTTTGGTGGTTGAAGGGTTTATACAAATTTACTTGGATGGGTGGAGAAGCATTGAGAATCTCTTTGTTAGAGTTTGTTTTGTTAAATAAATGTGAGAATTGAGAGCATCAAATAAGCTGTTTTCCATGCTCAGAACGTGGATAAAGTATGGGTTTTGGTGTCTTGGGTTTGTTTTGGTTTTGGGTTTTTGAGTCAGGGACTCACCTGAGATGATTTTCTCATGTTTGCTCCCAGTTCCCGTGGAAGATTTTTTGTTTTGAGAGAGGGTCTCACTATGTAGCCTCTGGCTACCGAGGAGTTCGCTGTGGAGAACAGGCTGGACTTGAACTCAGAGATCCTCCTGTCTCTGCCTTCCGAGTGCTGGGACCATAGGAGTGTGTCACCACACTGCACTACCTACACTTACTAATAGGCTCACAGACCCTTTACTTCAATTCCTTATTTGGCTGGCGCTTCCAATGCTGTCTTTTGTTTCAGGTCCTATTTTCTGGAACTCTATTTCTTTTTCTTTTTTCGTTTTCTTTTTCTCTTTAAAGTTCTTTTATTTTGTTTTGTGTATGAATGTTTTCTCTACTCATATGTCTGTGTACCACATGCATATCCTGTGCCTGCAGAGGGCATTTGATTCATTGAAACTGAAGTTGCAGGCAGTTGTGAGCCACCATGGAGGTTGCTGGAAATTAAACACAGGTCCTCTGCAAGAGCAACCAGTGCTCTTGAGCACTGCCCCACCCTCTGGCTCTCCCTTGCTCTTTCCAATCCTATAGGACCTGCTATGTCCAGTTTTCCCTTTGGCTGTAAGTCATAGGGCATTCTCTTCAGTCTACTTTCTCTTTCTGCAGAGTCATAAACCTGGAAGGGACAGTAGAGATCACCCAGTGCAGACCTTTTCTTTTGGTTTTGAGGAAACTGAGGCCCTGAGGAGTTAAGGCACTGTGTTGCTATGGTTAGCATATACGCACTACATTTCTTCAGCCCCAGCTTTGCCACATGTCACAGGCGTTGAAAAAGACTCATGCAAGAAAGAATTTGCTGTGTAAGTTGTTCTTTTAAGGAGTAACAATCAGGTATGATGAGAAGAAATAGACAACATTGGCTTCTCTGGAATATACGTACATATATATGTAAGAAATCGTGGTTTGGTTAAAAGGTGATAGCCATGCTTAGACTGGGAGAAGCCATCATTATTCATAATAATAACATGCTTTTATTGGGACTTTTAAAATCTATTTTCTTTTGCATGTTTTGGTGTTTTGCCTGCATGTTTATATATGTGCCACATGCCTGCCTGGCGCCTGGGGAAATTGGAATAAGACATTCTGTTTTCTGGAGCTGTAGTTAAAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGATCCTCTGGAAGAGCAGCAGTGCTCTGAACCACTGAGCCCTCTCTGCAGCCCTTTTATTGAGACTTTTAAAAAATTTCACATTCCATGGCGTCTTTTGGTTTTCTCAGACAGGGTTTCTCTGGGTACCCCTGGCAATCCAGGGACTTGCTCTGCAGACCAGGCTGGCCTCAAATTCACAGAGCTCCACCTACCTCTGCCTCCTGAGTGCTGGGATTAAATGTGTGCACCACTGCCTGACTGAAGTACCAAAATTTTAAGTCATTTTTAAGGCTTCTTATTTTAGCAATGATTTAATATCTTTAGCTGATATTTAATGTTTCTGTTTAATGAAGCAAAATGAAGGATAACTTTGAAGATGACATTTAAAATATTACAAAGAGACTTTTTATTGAAAACTATTAAGATACGTTTAAGAAGAATTCTTTCCATACTTTAGTATTGGAAATAAAAAGAAATTCTGAAGACAAATCGTTCTGGTCCAAAACAGGCCTCGTCAATAATGTTTAATGTATTTACAGGCCAGTTGACACCATACACTGATATTTTTAGATAACTGTAAGGATCCTTCTAACATGGTTAGCTTTTTTTCTTTCTTTTCTTTTGAATTTTAAGCTTCATTATATTAAAAAAAGGGGGGGGGTTGGGGATTTAGCTCAGTGGCACAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAGGAAAAAAAAAAAAATCACACACCAACATTAACCAGACCCGAAGAGTATCCAACTCAGTGTACTGTGTACAGGTGCAGTAGCCATTGAGAATGGAAGCTGTGAAACCTCCCATTGGACCTGAACACTTTTACTATCGGATATATTTATACTTACCTACCACAGAAAATAAAACAATTCATGAGAGAGTTAAAACTAGAACATATTTTTAAAATCCCTGCCAATCTCTTCAGAAAAGCTGTCAATATAAATTGATTAAGCTAGAGATGTCAGATACAGGTTTCCTAAAATAATTTCTAATCTTTCTTTCTTTATTTATTTTTATTTTATGTGCATTGGTGTTTTGCATCTGTGTCTATGTGAAGGTGTATGAGGGTGTCAGATTGTGGAGTTAGTTACAGATAGTTGTGAGCTGCTATGTGGGTGCTGGGAATTGAACCCAGGTCCTCTGGAAGACCAGTCAGTGCTCTCAACAGCTGAACCATCTCTCCAGCCCTTTCTAAATTTTTTTAAAAGAATTGTTTATTTTATGTTTATGAGTACACTATAGCTATCATCAGACTCAACAGAAGAGGGTATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGTTCTTAACCACTGAGCCATCTCTCCAGCCCCCTTCTCTAGTTTTTACTTAAAAGTTTGGTAGTAAATACTGTGAGTTGTTTACCTTGAAATGGCAGTCTTCCTTCATTTTCCAGAAAATATCTGCCTGATGTCCCCTTCTCAAAATAGTTTAGCATATAGTCTCAAAAATATGATTTATGAAAAAGATAGCTAAGGCTATTATTACTCAGATTTTCTGTATACTTTGTCTAGAGACAGCAGTCAACTACTGATAAACATGGCAGTGTTTTGTGCCATGTCTCCTTGTATGACTGTGCTGGTTGGTTTCTCTCAACCTGACACAAAAGGGTCACCTGAGGGAGAGAACCTCAATTGAGAAAATGCCTCCATCAGATTGGCCTGTAGACAAGGGCATTTTCTTGATCTATGATTGTTGTGGGATGACCTGCCCCACTCTGAGTGGTGCCATCCTTGGGCATGTGGTCCTGTGTTGTCTTAAGAAAGGTTAGGCAAGCTATGGGCAGTCAGCCAAGAAGCAGATTCCTCTGGTCTCTATTTCAATTCCTGCCCTTCCTTCAGTGATGGATTATGACCTGGGAGTTATAAGAGGAAATAAATTTTTTCTTTGCTGGTTACAGTCAGTAGACCTGGTTCATAACAGTAGAAGCAAACTAGGACAGTCACACCCATATTCAAGCGTATTCTCTTGATTGCCTTTATGTCTGTGTATCGAAGTGCATGCATTGCCCCTGGAGTTCAGAAGAGCGCACTGGATCCCCTGAAACAAGAATTACAGACAGTTGTGAGCTGCCATGTGGGTGCTGGGAATTGTCAAAATTCAAATTAAAATAACTTGAAAATGTTGTTTTATTGACACCATTCTTAATTTCTGGAACTAAATTGCCTTGTTTTGTTTTACAGTAAATGCATGGCAGAAGGATCCCAAGAGCTCACTGCCCAACCAGCATAGCTCAAACAATGACTCTTGCTCTCAGTTCAGTGAGAAACTGGGTCAGGACAATTCAGAGAGCAAGAGGGGAAGGTGCCCAAATGCCCTGCTCTGGGCCCTTCATGTATACTCACAGAAACTCATGAGTTACTATATATATTTATTGTTCCATTAACAAGCATTTATTGTTTGTTTTTAG
Seq C2 exon
AGACATTTTAAATCTAAAGGATATGAAGAGCGTCCGATTGGAGGATAGCAGTTGTAACAAAAACTTTTGTAGCCAGTCTTGTCTTACATCATATGAAGAAAAACGAAAGCCATGTGTTACCGTATATACTGAGAGCACTTTGCCTAAGTGCAGCATGTGTCAGAGGACATCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013855:ENSRNOT00000064015:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=61.5),PF064679=zf-FCS=PU(27.3=18.5)
A:
NA
C2:
PF064679=zf-FCS=PD(70.5=52.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]