Special

FBgn0000014 @ dm6

Biotype
protein_coding
Gene Symbol
abd-A
Description
The gene abdominal A is referred to in FlyBase by the symbol Dmelabd-A (CG10325, FBgn0000014). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (2 unique). Gene sequence location is 3R:16807214..16830049. Its molecular function is described by: DNA-binding transcription factor activity; RNA polymerase II cis-regulatory region sequence-specific DNA binding; cis-regulatory region sequence-specific DNA binding; sequence-specific DNA binding; DNA-binding transcription factor activity, RNA polymerase II-specific. It is involved in the biological process described with 26 unique terms, many of which group under: reproduction; developmental process involved in reproduction; imaginal disc development; muscle tissue development; pole cell migration. 128 alleles are reported. The phenotypes of these alleles manifest in: germline cell; male reproductive system; A1-7 ventral oblique muscle; eo-type sensillum; dorsal thoracic disc. The phenotypic classes of alleles include: increased cell death; phenotype; lethal - all die before end of prepupal stage; cell number defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed during late larval stages, during early pupal stages.
Coordinates
chr3R:16807214-16830049:-
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
88.48
58.62
0
Alternative 3'ss
240
chr3R:16827898-16828137
-
9.19
52.73
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000037965 HOXC8 2-to-4
Human hg38 ENSG00000120068 HOXB8 2-to-4
Human hg38 ENSG00000175879 HOXD8 2-to-4
Human hg38 ENSG00000197757 HOXC6 2-to-4
Human hg19 ENSG00000037965 HOXC8 2-to-4
Human hg19 ENSG00000120068 HOXB8 2-to-4
Human hg19 ENSG00000175879 HOXD8 2-to-4
Human hg19 ENSG00000197757 HOXC6 2-to-4
Mouse mm10 ENSMUSG00000001657 Hoxc8 2-to-4
Mouse mm10 ENSMUSG00000001661 Hoxc6 2-to-4
Mouse mm10 ENSMUSG00000027102 Hoxd8 2-to-4
Mouse mm10 ENSMUSG00000056648 Hoxb8 2-to-4
Mouse mm9 ENSMUSG00000001657 Hoxc8 2-to-4
Mouse mm9 ENSMUSG00000001661 Hoxc6 2-to-4
Mouse mm9 ENSMUSG00000027102 Hoxd8 2-to-4
Mouse mm9 ENSMUSG00000056648 Hoxb8 2-to-4
Rat rn6 ENSRNOG00000007585 Hoxb8 2-to-4
Rat rn6 ENSRNOG00000016442 Hoxc6 2-to-4
Rat rn6 ENSRNOG00000028619 Hoxc8 2-to-4
Rat rn6 ENSRNOG00000042480 Hoxd8 2-to-4
Cow bosTau6 ENSBTAG00000009238 HOXC6 2-to-2
Cow bosTau6 ENSBTAG00000012149 HOXC8 2-to-2
Zebrafish danRer10 ENSDARG00000054025 hoxb8b 2-to-5
Zebrafish danRer10 ENSDARG00000056027 hoxb8a 2-to-5
Zebrafish danRer10 ENSDARG00000070343 hoxc6a 2-to-5
Zebrafish danRer10 ENSDARG00000070346 hoxc8a 2-to-5
Zebrafish danRer10 ENSDARG00000101954 hoxc6b 2-to-5