Special

FBgn0013733 @ dm6

Biotype
protein_coding
Gene Symbol
shot
Description
The gene short stop is referred to in FlyBase by the symbol Dmelshot (CG18076, FBgn0013733). It is a protein_coding_gene from Dmel. It has 23 annotated transcripts and 23 polypeptides (21 unique). Gene sequence location is 2R:13864237..13942110. Its molecular function is described by: microtubule binding; actin binding; protein binding; calcium ion binding; structural molecule activity. It is involved in the biological process described with 23 unique terms, many of which group under: cytoplasmic microtubule organization; wound healing; branching involved in open tracheal system development; cilium organization; regulation of microtubule polymerization or depolymerization. 114 alleles are reported. The phenotypes of these alleles manifest in: membrane-bounded organelle; endocuticle; cellular anatomical entity; stomodeal invagination late; embryonic/larval integumentary system. The phenotypic classes of alleles include: lethal; increased mortality; phenotype; increased mortality during development. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 18-24 hour embryonic stages.
Coordinates
chr2R:13864237-13942110:-
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
17
chr2R:13942066-13942082
-
50.34
95.47
0
Alternative 5'ss
265
chr2R:13941818-13942082
-
34.96
92.4
0
Alternative 5'ss
106
chr2R:13910777-13910882
-
90.81
27.2
0
Alternative 5'ss
91
chr2R:13897548-13897638
-
88.02
21.04
0
Alternative 5'ss
0
NA
-
63.77
74.11
0
Alternative 5'ss
62
chr2R:13865757-13865818
-
34
67.99
0
Exon Skipping
73
chr2R:13923845-13923917
-
0.89
14
0
Exon Skipping
627
chr2R:13921547-13922173
-
62.69
92.89
0
Exon Skipping
194
chr2R:13868156-13868349
-
71.02
100
0
Exon Skipping
179
chr2R:13867125-13867303
-
31.78
100
0
Exon Skipping
66
chr2R:13866061-13866126
-
47.7
98.39
0
Exon Skipping
12
chr2R:13874732-13874743
-
10.94
88.03
0
Exon Skipping
24
chr2R:13903704-13903727
-
8.54
100
0
Exon Skipping
84
chr2R:13900366-13900449
-
60.98
96.59
0
Exon Skipping
222
chr2R:13899450-13899671
-
49.54
100
0
Exon Skipping
198
chr2R:13895110-13895307
-
11.53
43.75
0
Exon Skipping
131
chr2R:13894839-13894969
-
61.93
93.81
0
Exon Skipping
463
chr2R:13894130-13894592
-
38.81
92.66
0
Exon Skipping
60
chr2R:13871666-13871725
-
59.24
100
0
Exon Skipping
72
chr2R:13870840-13870911
-
65.88
97.87
0
Exon Skipping
18
chr2R:13917709-13917726
-
13.88
100
0
Exon Skipping
60
chr2R:13917566-13917625
-
15.33
100
0
Exon Skipping
763
chr2R:13907589-13908351
-
15.88
83.7
0
Exon Skipping
149
chr2R:13865757-13865905
-
17.72
100
0
Intron Retention
3136
chr2R:13922174-13925309
-
16.08
100
0
Intron Retention
987
chr2R:13900450-13901436
-
8.49
38.54
0
Intron Retention
11582
chr2R:13882548-13894129
-
16.7
80
0
Intron Retention
1510
chr2R:13868350-13869859
-
10.23
91.78
0
Intron Retention
1180
chr2R:13866976-13868155
-
5.57
69.65
0
Intron Retention
641
chr2R:13917208-13917848
-
7.66
100
0
Intron Retention
565
chr2R:13865496-13866060
-
8.05
41.42
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000096696 DSP 1-to-8
Human hg38 ENSG00000127603 MACF1 1-to-8
Human hg38 ENSG00000167880 EVPL 1-to-8
Human hg38 ENSG00000214860 EVPLL 1-to-8
Human hg38 ENSG00000261150 EPPK1 1-to-8
Human hg19 ENSG00000096696 DSP 1-to-8
Human hg19 ENSG00000127603 MACF1 1-to-8
Human hg19 ENSG00000167880 EVPL 1-to-8
Human hg19 ENSG00000214860 EVPLL 1-to-8
Mouse mm10 ENSMUSG00000022565 Plec 1-to-6
Mouse mm10 ENSMUSG00000026131 Dst 1-to-6
Mouse mm10 ENSMUSG00000028649 Macf1 1-to-6
Mouse mm10 ENSMUSG00000034282 Evpl 1-to-6
Mouse mm10 ENSMUSG00000054889 Dsp 1-to-6
Mouse mm9 ENSMUSG00000022565 Plec 1-to-6
Mouse mm9 ENSMUSG00000026131 Dst 1-to-6
Mouse mm9 ENSMUSG00000028649 Macf1 1-to-6
Mouse mm9 ENSMUSG00000034282 Evpl 1-to-6
Mouse mm9 ENSMUSG00000054889 Dsp 1-to-6
Rat rn6 ENSRNOG00000012207 Dst 1-to-2
Rat rn6 ENSRNOG00000016047 Macf1 1-to-2
Cow bosTau6 ENSBTAG00000002178 PPL 1-to-6
Cow bosTau6 ENSBTAG00000010517 EVPL 1-to-6
Cow bosTau6 ENSBTAG00000015106 DSP 1-to-6
Cow bosTau6 ENSBTAG00000021024 MACF1 1-to-6
Cow bosTau6 ENSBTAG00000021237 DST 1-to-6
Chicken galGal4 ENSGALG00000002108 EVPL 1-to-8
Chicken galGal4 ENSGALG00000002201 PPL 1-to-8
Chicken galGal4 ENSGALG00000012790 DSP 1-to-8
Chicken galGal4 ENSGALG00000016289 DST 1-to-8
Chicken galGal3 ENSGALG00000002108 1-to-8
Chicken galGal3 ENSGALG00000002201 Q6PVZ7_CHICK 1-to-8
Chicken galGal3 ENSGALG00000012790 DSP 1-to-8
Chicken galGal3 ENSGALG00000016289 DST 1-to-8
Zebrafish danRer10 ENSDARG00000022309 dspa 1-to-13
Zebrafish danRer10 ENSDARG00000089435 macf1b 1-to-13
Zebrafish danRer10 ENSDARG00000096359 eppk1 1-to-13
Zebrafish danRer10 ENSDARG00000101043 ppl 1-to-13
Zebrafish danRer10 ENSDARG00000102406 si:ch211-165e15.1 1-to-13